Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3954
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.5  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 64  PPDGEWLPSPMDFSNARG 11
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 664 ESAITPFVYNEIVFGSSVT 608
           E  +T +VY EI+ G  +T
Sbjct: 34  EDRVTMYVYEEIINGKKLT 52


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/34 (26%), Positives = 13/34 (38%)
 Frame = -2

Query: 463 YPGNIHTVPNLFLFIFYCLDGWTSSQSTWLLSGY 362
           +PGN  +    F  ++Y  D  T     W    Y
Sbjct: 100 FPGNALSCKETFSLLYYEFDVATKEPPPWETDSY 133


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 649 PFVYNEIVFG 620
           PF YNE +FG
Sbjct: 590 PFTYNERIFG 599


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 649 PFVYNEIVFG 620
           PF YNE +FG
Sbjct: 590 PFTYNERIFG 599


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 219 VVPTRENSQEFPTTGNYTNYN 157
           ++ +  N+ ++    NY NYN
Sbjct: 81  IISSLSNNYKYSNYNNYNNYN 101


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 219 VVPTRENSQEFPTTGNYTNYN 157
           ++ +  N+ ++    NY NYN
Sbjct: 314 IISSLSNNYKYSNYNNYNNYN 334


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +3

Query: 48  HSPSGGPCARLPTRAIRKKNLSPLYLALPLQKSNQQN 158
           +SP G P A L  + +   N     LA   Q+  Q N
Sbjct: 93  NSPVGSPSAALQPQHVVYGNPQQQQLAAETQQQQQHN 129


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 88  LVGRRAHGPPDGEWLP 41
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,478
Number of Sequences: 438
Number of extensions: 5299
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)