Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3950
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 33 0.15
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445... 31 0.80
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 31 1.1
04_01_0260 - 3506672-3508981 30 1.8
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 28 5.6
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 28 7.4
02_02_0145 + 7163922-7165604 28 7.4
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 7.4
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 27 9.8
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Frame = +1
Query: 22 NLRRVNKLYPNQASFLADNTRLLTSTPSGF--TNVLSAPSVRNLGNNRYQPGYQLSNNRF 195
NL ++ N A + NT +L + F N S + ++GN +LSNN+
Sbjct: 488 NLHMLDLSGNNLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQL 547
Query: 196 VST--SDINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMD 315
ST + + ++ RN+F G I L+Q+ +MD
Sbjct: 548 SSTVPPSLFHLDSLIELDLSRNLFSGALPVDIGHLKQIYKMD 589
>02_05_1312 +
35642687-35642923,35643712-35643831,35644468-35644534,
35644673-35644694,35645053-35645152,35645282-35645414,
35645483-35645517,35645708-35646409,35646789-35647121,
35647337-35647601,35647665-35647999,35648105-35648177,
35648271-35648356,35648479-35648598,35648674-35648741,
35648825-35648882
Length = 917
Score = 31.1 bits (67), Expect = 0.80
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 345 TDAIQCS----QTKLPGDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLW 491
+D QC +T D R A+RC K+ +PP T S + E SG LW
Sbjct: 700 SDVAQCPNHNHETNNSDDARIGAQRCQKKAKGRPPKTGSGVS-EHQESGGALW 751
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +1
Query: 379 PETNVRTPEGVQNALQQN---PRLHNHMRTLKVAGVGILFGPAAVIFCLPPP 525
P V+TPE A + PR + +R L VA + ++ AA + C+PPP
Sbjct: 314 PRARVQTPEPEPTASSERARRPRKRSSLRFL-VAPLALVVFMAAALICVPPP 364
>04_01_0260 - 3506672-3508981
Length = 769
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 190 RFVSTSDINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 369
RF+ + ++ R N++ P ++ G Q N LRQ R ++ ++ + Q + NA
Sbjct: 359 RFILSLNLFRFLVNSNNPTRYRMWSGTIG-QYNLLRQCTRQEDEKTSNFWSSQWKKNAPE 417
Query: 370 QNFPETNVRTPEGVQ 414
+ E G+Q
Sbjct: 418 DTWMEYEYHNSRGIQ 432
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +3
Query: 255 CISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPGDQRAHARRCSK 416
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +1
Query: 22 NLRRVNKLYPNQASFLADNTRLLTSTPSGFTNVLSAPSVRNLGNNRYQPGYQLSNNRFVS 201
N R++N + + S A R++ ++ S R YQ R +
Sbjct: 251 NARQINNTHHSTTSSSAPAWRMVKEQKDSHLDLERLDSARKRLQENYQEAQNAKKQRTIQ 310
Query: 202 TSDINRITRNNDIPNIRNVF 261
DIN I + P RN F
Sbjct: 311 VMDINEIPK----PKNRNAF 326
>02_02_0145 + 7163922-7165604
Length = 560
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 61 SFLADNTRLLTSTPSGFTNVLSAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDI 240
SF A+N + P+ + + + ++ NL N+ ++ N F ST N+I +++
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533
Query: 241 PNIRNVFQG 267
I QG
Sbjct: 534 KEIGLQSQG 542
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +1
Query: 142 NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNV 321
N G ++ PGY SNN + S S + +N + + +Q + N+ + + N
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197
Query: 322 PDFHYH 339
+HYH
Sbjct: 198 NSYHYH 203
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 261 SGHFRPSNKLIAPIAAHGQRARLSLPHQTDA 353
S R + +A AHG+ L LPH TDA
Sbjct: 192 SSESRGATLAVAAATAHGREEPLLLPHGTDA 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,792,645
Number of Sequences: 37544
Number of extensions: 475113
Number of successful extensions: 1207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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