Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3950
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 30 1.2
Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein. 29 2.9
AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical... 29 2.9
Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical pr... 28 5.0
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 28 5.0
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 28 5.0
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
C05C9.3 protein.
Length = 1225
Score = 31.1 bits (67), Expect = 0.71
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +1
Query: 172 YQLSNNRFVSTSDINRITRNNDIPNIRNVFQGISDPQINSLRQLRRM-DNVPDFHYHTKQ 348
+QL N + R + + ++N + Q NS +Q ++ + + ++H +Q
Sbjct: 1064 HQLVNKVRPHYQQQGEMKRQDGMHQMQNQLHHHQNFQFNSGQQATQVHEQQQNQNHHVRQ 1123
Query: 349 TRSNAVRQNFPETNVRTPEGVQNALQQNPRLHNHMRTLK 465
V Q+FP +V+ Q QQN R H+ + K
Sbjct: 1124 AVQEEVFQSFPRHDVQRHIHGQTNYQQNQRQHSQQQVYK 1162
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical protein
F26A3.3 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 346 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 245
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 346 VWCGNESLARCPCAAIGAMSLFEGLKCPEIHCVC 245
V G L + PC G + +FE + PE+H +C
Sbjct: 920 VLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMC 953
>Z75954-3|CAB00108.1| 323|Caenorhabditis elegans Hypothetical
protein F58H1.5 protein.
Length = 323
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 145 LGNNRYQPGYQLSNNRFVSTSDINRITRNND 237
+ + +++P Q S+N+FVS SDI I + D
Sbjct: 28 ISDEKFEPAEQCSSNQFVSISDIGTIYDSED 58
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Frame = +1
Query: 19 TNLRRVNKLYPNQASFLADNTRLLTSTPSGFTNVLSAPSVRNLGNNRYQPGYQLSNNRFV 198
T+L ++ + AS L D TR++ TP F+ + R+ G+ P L ++ V
Sbjct: 28 THLTQMCRRGDTNASLLRDFTRMIRDTPRNFSKNTQHGNDRDFGDLERDPDVDLLLSK-V 86
Query: 199 STSDINRITRNNDIPNIRNVF--QGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVRQ 372
+ + IP +F +SD IN + + + + + TR N + +
Sbjct: 87 CLECVYVEPKEGAIPKANKIFISNFLSDMYINLVSVTGEVMKIIPIWKNAETTRKNLLEK 146
>Z78419-7|CAC42290.1| 1601|Caenorhabditis elegans Hypothetical
protein F26A3.8 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 337 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 245
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AF159144-1|AAF80368.1| 1601|Caenorhabditis elegans RRF-1 protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 337 GNESLARCPCAAIGAMSLFEGLKCPEIHCVC 245
G L + PC G + +FE + PE+H +C
Sbjct: 896 GTVLLTKNPCIVPGDVRIFEAVDIPELHHMC 926
>AC084159-16|AAK39357.1| 205|Caenorhabditis elegans Hypothetical
protein Y73B3A.7 protein.
Length = 205
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Frame = +1
Query: 166 PGYQLSNNRFVSTSDINRITRNNDIPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTK 345
P L NR V + + + NND N +N Q I PQ+ ++ +R+ Y K
Sbjct: 3 PKNLLKKNRIVIEASLV-LHNNNDNNNNKNRMQMIMAPQLRRIQMVRK----SIMGYRGK 57
Query: 346 QTRSNAVRQNFPETNVRTPEGVQNALQQ-NPRLH 444
+ ++ T+ R P +N Q RLH
Sbjct: 58 RKTDQQLKSTNNPTSSRLPLNTKNVAQALGGRLH 91
>Z81078-1|CAB03075.3| 441|Caenorhabditis elegans Hypothetical
protein F36H2.2 protein.
Length = 441
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 35 SINCILIRPVFLLIIRVF*QALPPVSQMCSARP 133
S N + + P +LLII AL P+ MC+ RP
Sbjct: 335 SANSLRLSPKYLLIISFLRFALIPMIAMCNVRP 367
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 139 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDIPNIRNV 258
RN GNNRY P ++ +R D NR+T N +P+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>Z69717-2|CAA93532.2| 204|Caenorhabditis elegans Hypothetical
protein E01G6.2 protein.
Length = 204
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 560 EPAGSYYVQGRNAGRKRSSPVCYCNRTLS 646
EP SY + GR++GR SSP + T S
Sbjct: 164 EPTSSYSLDGRDSGRGASSPSSTMSSTTS 192
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 139 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDIPNIRNV 258
RN GNNRY P ++ +R D NR+T N +P+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 139 RNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDIPNIRNV 258
RN GNNRY P ++ +R D NR+T N +P+ +
Sbjct: 9 RNDGNNRYSPQDEV-EDRLPDVVD-NRLTENMRVPSFERL 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,973
Number of Sequences: 27780
Number of extensions: 401668
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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