Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3949
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122122-1|AAM52634.1|  262|Drosophila melanogaster GH20441p pro...    30   3.5  
AE014134-2520|AAF53408.1|  262|Drosophila melanogaster CG4691-PA...    30   3.5  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   4.6  
AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein ...    29   4.6  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   4.6  
AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB...    29   4.6  

>AY122122-1|AAM52634.1|  262|Drosophila melanogaster GH20441p
           protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 612 PAVG-KYLKTKQTLGKLPPGGFKHIN 686
           P +G  +L  KQ LG LPP  F+H N
Sbjct: 7   PLIGMSHLLQKQVLGFLPPSSFRHFN 32


>AE014134-2520|AAF53408.1|  262|Drosophila melanogaster CG4691-PA
           protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 612 PAVG-KYLKTKQTLGKLPPGGFKHIN 686
           P +G  +L  KQ LG LPP  F+H N
Sbjct: 7   PLIGMSHLLQKQVLGFLPPSSFRHFN 32


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -2

Query: 669 PPAAICRVSALFLNISQQRV-------GHFQGAEHSHVFAERQFNFQSFI 541
           P   + RV+A+ +++  QR+       GH  GAE  H+F  R   F  F+
Sbjct: 23  PKVNLFRVAAIPVDVQLQRIRNLDKDAGHGHGAESPHLFCARALTFPLFV 72


>AY395750-1|AAR89513.1| 1199|Drosophila melanogaster ATM protein
           protein.
          Length = 1199

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 373 YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY--ELAEFDLKNLSSLESYE 546
           Y H+ +   +   I+  R    KV   T+  N D ++        A  D + L+ +E   
Sbjct: 588 YRHSQEYQTLKDIIEQNRQTAEKV---TQRENQDRRVISVQMKRYASLDEQQLNQIEEKL 644

Query: 547 TLKIKLALSKYMA 585
           T  ++LAL+ YMA
Sbjct: 645 TEYLRLALTNYMA 657


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -2

Query: 669 PPAAICRVSALFLNISQQRV-------GHFQGAEHSHVFAERQFNFQSFI 541
           P   + RV+A+ +++  QR+       GH  GAE  H+F  R   F  F+
Sbjct: 23  PKVNLFRVAAIPVDVQLQRIRNLDKDAGHGHGAESPHLFCARALTFPLFV 72


>AE014297-1966|ABI31168.1| 2767|Drosophila melanogaster CG6535-PB
            protein.
          Length = 2767

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +1

Query: 373  YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY--ELAEFDLKNLSSLESYE 546
            Y H+ +   +   I+  R    KV   T+  N D ++        A  D + L+ +E   
Sbjct: 2156 YRHSQEYQTLKDIIEQNRQTAEKV---TQRENQDRRVISVQMKRYASLDEQQLNQIEEKL 2212

Query: 547  TLKIKLALSKYMA 585
            T  ++LAL+ YMA
Sbjct: 2213 TEYLRLALTNYMA 2225


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,468,030
Number of Sequences: 53049
Number of extensions: 512179
Number of successful extensions: 1076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)