Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3948
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    29   0.65 
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    27   3.5  
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   3.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    27   3.5  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 1040

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 19 HHFWITTVDVVTNCDFSNKE 78
          H FW T VD  T+C F + E
Sbjct: 6  HSFWATAVDTATSCHFISSE 25


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 431 PLRRSGEKFSGFCPWVIYSSSPSSQATALARMVTGA*GRIRYD-VFRAFFTIIQSGTL 261
           P+  S   F+G C  +++S   +   TALA     A G  R + V ++   ++ SG +
Sbjct: 7   PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGII 64


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 366 FVTSDGFGEDGD 331
           +VTSD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = -3

Query: 366 FVTSDGFGEDGD 331
           +VTSD FGEDGD
Sbjct: 499 YVTSDDFGEDGD 510


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 283 VKNALNTS*RILPQAPVTILAKAV--ACDEGLDE*ITHGQNPLNFSPDLLSGS 435
           VK  L T+  + PQ PV+ILAK++  +    + E +   +   +FS + L+ S
Sbjct: 268 VKLLLQTAITLEPQVPVSILAKSLPKSVKGAVQEFVIKAELTFSFSNESLASS 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,707
Number of Sequences: 5004
Number of extensions: 54157
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)