Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3946
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           31   0.74 
04_04_0448 - 25314042-25314183,25314271-25314321,25314437-253150...    30   1.7  
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366...    28   6.9  

>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = -2

Query: 210 LNQNIDHCYEIFTNFKNF----VSRPNITLRNTIKQILSGF-LFERVFFSLE 70
           LN+ +D C +I  NF NF    ++R + +  N + Q  SG+ + +R+F  LE
Sbjct: 405 LNRYLDSCLDIIANFDNFAIRHIARRDNSRANDLAQQASGYNVKKRIFLVLE 456


>04_04_0448 -
           25314042-25314183,25314271-25314321,25314437-25315033,
           25315151-25315353
          Length = 330

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 455 YGSVGVKWLPEPIDINNVNAATQFYNALLLQGRNRQSDGTYP 580
           Y S   KWL E   + NV+  +  Y +L L GR R S   YP
Sbjct: 261 YTSEWAKWLDEQKKLANVSPDSPVYLSLRLDGRVRGSGVGYP 302


>02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,
            3660486-3660654,3660757-3660873,3660956-3661102,
            3661203-3661388,3661472-3661720,3662196-3662432,
            3662511-3662673,3662748-3662866,3662976-3663068,
            3663595-3663735,3663813-3663896,3663974-3664084,
            3664162-3664260,3664501-3664623,3664908-3664958,
            3665152-3665275,3665357-3665514,3665595-3665709,
            3665931-3666060,3666163-3666328,3667047-3667136,
            3667650-3667857,3668270-3668439,3668542-3668577
          Length = 1199

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 232  YLFLHI*FDLIHISSQSQAYKSVLNKRVIKKYMFLLITHCES 357
            YL LH   ++I   S     +S L    I+K + LL  HCES
Sbjct: 881  YLLLHSLKEVIARQSVDHTGQSELQDSNIEKILALLFNHCES 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,974
Number of Sequences: 37544
Number of extensions: 328157
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)