Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3946
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000266-9|AAC71169.1|  566|Caenorhabditis elegans Hypothetical ...    30   1.5  
U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...    29   2.7  
Z77654-5|CAE17774.1|  204|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z68318-7|CAA92696.2|  385|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    28   6.2  
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    28   8.1  

>AF000266-9|AAC71169.1|  566|Caenorhabditis elegans Hypothetical
           protein W08F4.2 protein.
          Length = 566

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = -2

Query: 315 NTFI*HTFIGLTLT*YMNQIKSYMKKKIDQRYIFHLNQNIDHCYEIFTNFKN 160
           NTF+ H   G  LT  +NQ+   +++ I++RY  H  + ++H +E+F   K+
Sbjct: 310 NTFLFH---GFQLTLNLNQLNVEIRQFINRRY--HHTKWLEHIFEVFIQNKS 356


>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 255 KSYMKKKIDQRYIFHLNQNIDHCYEIFTNFKNFVSRPNITL 133
           ++Y K KI+ R  F    +I    EI  +F NF+ + NIT+
Sbjct: 80  EAYQKMKINFRNGFSFEVDIPENAEIEEDFSNFIDKYNITV 120


>Z77654-5|CAE17774.1|  204|Caenorhabditis elegans Hypothetical
           protein C50B8.6 protein.
          Length = 204

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/69 (20%), Positives = 33/69 (47%)
 Frame = -2

Query: 210 LNQNIDHCYEIFTNFKNFVSRPNITLRNTIKQILSGFLFERVFFSLEFIFKTIF*LFFNN 31
           +NQ +D+  +   N           + NT++Q+ + ++F  +F +L  +F  +  L   +
Sbjct: 35  VNQTLDNFDQAVANLAKDAGSLTYQVGNTVQQVPNAWIFYFIFITLIVVFILLSILILLS 94

Query: 30  VILKLKTTF 4
           V+ K +  +
Sbjct: 95  VVTKAQVIY 103


>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 630 FFLRVWCINHAMLFIKIIHY 689
           FFL  WCIN  ++FI  + Y
Sbjct: 189 FFLMTWCINDIIVFISALLY 208


>Z68318-7|CAA92696.2|  385|Caenorhabditis elegans Hypothetical
           protein T21B10.6 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 334 LLITHCESLKGSSTHSIFKNSGC 402
           ++I +CE + G  TH +  +SGC
Sbjct: 194 IMIENCELVGGEETHEVIDSSGC 216


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 107 PAFYLSVFFLVWNLYLKLYFNYF 39
           P+F L +FFL++  Y K+Y N F
Sbjct: 31  PSFILMIFFLIYLGYSKMYTNSF 53


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 401 AFTYSLFNFFND*MDGCTYGSVGVKWLPEPIDINNVNAATQFYNALLLQGRNRQSD 568
           AFT+S F+F +  MD C    +G+    + I++  V  A Q +  +L +   R+++
Sbjct: 161 AFTFSSFSFADPLMDYCIAFKIGIFGSTDVINLTGV--AIQIFGRILFELMFRKNE 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,992,725
Number of Sequences: 27780
Number of extensions: 332272
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)