Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3944
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    27   2.8  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   3.7  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   3.7  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   3.7  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   4.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.9  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   6.5  

>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +1

Query: 334 PMICKGSKMSLRSKVTLYKL 393
           P ICKG++++L++ +TL K+
Sbjct: 63  PTICKGNEIALKNNITLEKV 82


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 685 PPTTLRNPAHAESQSPSTP 741
           PPT+   P H  ++SPSTP
Sbjct: 219 PPTSDMQPTHELNESPSTP 237


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 81  CTLP*GNSNANQHLLVVGHIVSPHG*FDS 167
           C LP GN     H+  V H V P+   DS
Sbjct: 522 CVLPNGNYEVGVHIADVTHFVKPNTSMDS 550


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 526 ESTRKYLMSTSDRYFDKAMRHDIYLFI*ISTATSQTSDIE 645
           + T+K+L+S +   +DK +RH +  F   ++A  Q  DI+
Sbjct: 307 DKTQKFLLSKASASYDKQLRH-VKSFNQTTSAPFQVRDIQ 345


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 637 DIENKFNNLIIALSLPP 687
           DI NKFNN ++  +LPP
Sbjct: 438 DIINKFNNFVLDPALPP 454


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 154 PCGLTICPTTSKCWFALLLPYGKVQPERCC 65
           PCG T+C    +  ++     GKV P RCC
Sbjct: 33  PCGGTVCRKCFRNAYSSESS-GKVSPSRCC 61


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 421 VWCININTFQLDFCALAVGVPWSFRNVDLRDDLGLESTRKYLMSTSDRYFDKAMRHDIYL 600
           +W + I+  +L    L    PWSF N+D  D +G+      ++         +   D+ L
Sbjct: 242 IWSLGISIIELATQEL----PWSFSNID--DSIGILDLLHCIVQEEPPRLPSSFPEDLRL 295

Query: 601 FI 606
           F+
Sbjct: 296 FV 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,605
Number of Sequences: 5004
Number of extensions: 63690
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)