Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3944
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.56 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.0  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   4.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = -2

Query: 171  DYCQTSRAGSRYALPPVNAGLHYYYLTVRYNQNAAARPNDLYDTHGK 31
            D  Q S    +Y L  +  G  Y      YN      P+D+ +T  K
Sbjct: 1411 DTAQISSTVQKYTLENLLCGSRYQIYVTAYNGIGTGDPSDMLNTRTK 1457


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 379 SPYSEGTFYSPYKS*DKVCRE*TRRGRGQI 290
           +P  +   +SP++  + V +   RR RGQ+
Sbjct: 370 APCGDARIFSPHEENESVDKHPNRRARGQL 399


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 186  LPTTVDYCQT 157
            +PTTV YCQT
Sbjct: 1200 VPTTVTYCQT 1209


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 186  LPTTVDYCQT 157
            +PTTV YCQT
Sbjct: 1196 VPTTVTYCQT 1205


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +1

Query: 379 TLYKLANDPS*HTRVWCININTFQLDFCALAVGVPWSFRNVDLRDDLGLESTRKYLM 549
           T+   A  PS   R  C+ +N  + D  A  +G   S RN+D+  D GL +  +YL+
Sbjct: 12  TVIVTALTPSTLGRFPCLLLNG-KXDLFARCMGGINS-RNMDIEHDPGLAAVLQYLI 66


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 166 LSN*PCGLTICPTTSKCWFALLLPYG 89
           L N  CG+ + P T+  +++ L  +G
Sbjct: 247 LKNGICGMALSPVTNNLYYSPLASHG 272


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 682 PPPTTLRNPAHAESQSPSTP 741
           PP +   N   AES+  STP
Sbjct: 273 PPASASSNEHEAESEHTSTP 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,961
Number of Sequences: 438
Number of extensions: 4523
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)