Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3942
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    29   0.51 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   2.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.7  

>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = -2

Query: 552 RGSPQNLGNINNLHGTAYRANSDVISERRDTEFKSVFRLPPTREHVHLTYSFALAFFCVK 373
           RGSP  L  I+ L GT+   +    S      F S+       E + L++ F    FC  
Sbjct: 219 RGSPGGLARIDALFGTSIYTDGFSNSPVVFGAFPSLHAGWAMLEALFLSHVFPRYRFCFY 278

Query: 372 CIVCYLCYC 346
             V +LC+C
Sbjct: 279 GYVLWLCWC 287


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 564  RAPPRGSPQNLGNINNLHGT 505
            ++PPRG    LGN+ N H T
Sbjct: 1034 KSPPRGMQLKLGNLTNSHVT 1053


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 437  RRKTDLNSVSLRSLMTSEFARYAVPCRLLILPR 535
            RR   + +++ +SL+  +FA  + P RLL+  R
Sbjct: 1152 RRSVGIAAITTKSLLQKDFAAESNPSRLLLAAR 1184


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 503 RIGRIRTSSASE---EIPNSNQSFACLRRESTF 414
           R  R R SS S    E+P+   S   LRRE+TF
Sbjct: 263 RASRSRQSSLSSRLSELPSKRASLEILRRENTF 295


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -1

Query: 574 NWVPGPPSRKSSESRQYQQSAWNRVSGE-FGRHQRAKRYRIQISLSPASDERARSFDI*F 398
           +W P  P+   S  +  +   WN  +GE  G   R+  +  + S  P++  R     +  
Sbjct: 267 SWCPEDPTFLLSSGKDGRAMVWNVETGESLGSFPRSGNWYTKSSWCPSNSNRVAVASLEG 326

Query: 397 CISVF 383
            +S+F
Sbjct: 327 KVSIF 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,648
Number of Sequences: 5004
Number of extensions: 31964
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)