Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3942
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0047 + 14430437-14430463,14430615-14430714,14431076-144311...    30   1.2  
10_05_0003 - 7715935-7716336,7716360-7716890                           30   1.2  

>10_08_0047 +
           14430437-14430463,14430615-14430714,14431076-14431153,
           14431340-14431427,14431536-14431640,14431998-14432540,
           14433023-14433157,14433256-14433364,14433578-14433726,
           14433800-14434046
          Length = 526

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
 Frame = -2

Query: 570 GYRAPPRGSPQNLGNINNLH-------GTAYRANSDVISERRDTEFKSVF----RLPPT- 427
           GY APP     N G  ++ H       G  +R NSDV+   R T F  V+    R P T 
Sbjct: 296 GYGAPPYMEESNGGAAHSSHLTSGQKDGDEHRRNSDVMEILRKTRFPMVYGQYERSPETI 355

Query: 426 REHVH------LTYSFALAFFCVKCIV 364
            EH        L Y  AL++  VK +V
Sbjct: 356 LEHDRIIWLGDLNYRIALSYRSVKALV 382


>10_05_0003 - 7715935-7716336,7716360-7716890
          Length = 310

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 517 SAWNRVSGEFGRHQRAKRYRIQISLSPASDERARSF 410
           +AWN   GE GRH+R+    +  S +P+SD     F
Sbjct: 2   AAWN--GGEMGRHKRSHSLSVTSSATPSSDATKLDF 35


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,605,068
Number of Sequences: 37544
Number of extensions: 191651
Number of successful extensions: 505
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)