Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3942
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    27   10.0 
U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin fam...    27   10.0 

>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
           protein F54E4.1 protein.
          Length = 2948

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 534 LGNINNLHGTAYRANSDVISERRDTEFKSVFRLPPTREHV 415
           LGNI  L  TA    SDV+    D++F  V  +P ++ H+
Sbjct: 58  LGNIEGLTFTACAVGSDVVI--LDSDFNRVQIIPESKNHL 95


>U53332-2|AAK31532.1|  473|Caenorhabditis elegans Tetraspanin family
           protein 18 protein.
          Length = 473

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 420 HVHL-TYSFALAFFCVKCIVCYLCY 349
           HV+L TYS ++   CV  +VC L Y
Sbjct: 95  HVNLKTYSISIYLLCVSFMVCVLSY 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,546,551
Number of Sequences: 27780
Number of extensions: 185094
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)