Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3940
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.7  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    25   10.0 
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   10.0 
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   10.0 

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 363 SVPSGKRTQTIPFHTNMS*LLRYR 292
           S PSG RT+ + +HT +  +L+ R
Sbjct: 7   SFPSGSRTKAVRYHTLLRPILQQR 30


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 210 PHYTRKYPLK*LSVRSSVCLSAEFFNVLDSVKVSSYLYGM 329
           P Y R++ +  L+  ++ CL       L  +  +SY  GM
Sbjct: 136 PAYIRQWSISCLTTSTAACLLLALQMALAHISANSYAVGM 175


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 404 DSVKVNPNLYAVGTASLAANVRKRSHSIQI*ANFYAIENI 285
           +S    P+L    T +  A +RKRS ++++    YAI +I
Sbjct: 41  NSTLTQPSLRKKNTMAAPARLRKRSENVRLTQARYAIFHI 80


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 404 DSVKVNPNLYAVGTASLAANVRKRSHSIQI*ANFYAIENI 285
           +S    P+L    T +  A +RKRS ++++    YAI +I
Sbjct: 41  NSTLTQPSLRKKNTMAAPARLRKRSENVRLTQARYAIFHI 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,476
Number of Sequences: 5004
Number of extensions: 39888
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)