Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3940
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    28   4.4  
11_06_0179 + 20952070-20955228                                         27   7.7  

>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 351 R*GRCSNCIQIWVHFYAVENVKKLSLSTLFASELMELI 464
           R G C+NCI  W     +++V+K  +  + A + +E +
Sbjct: 168 RRGYCTNCISRWYSDIPIDDVRKARVQEISAVDKLEYL 205


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 52  CAPELTYQSQRSWYSPLDYQRISRGKNNKKINRYDTLVFSLR-DKN 186
           CA E T   Q  WY  L  +  +     +K  +Y  L FSL  DKN
Sbjct: 55  CAAEATVNGQTDWYGILQVEATADEATIRK--QYRKLAFSLHPDKN 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,661
Number of Sequences: 37544
Number of extensions: 214990
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)