Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3940
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   1.7  
U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AL032627-10|CAB63356.2|  248|Caenorhabditis elegans Hypothetical...    28   5.2  

>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 76  SQRSWYSPLDYQRISRGKNNKKINRYDTLVF 168
           S+ SW    + +RI  GK+ KK++R   L F
Sbjct: 219 SEHSWVGEKELERIREGKSGKKVSRPKNLPF 249


>U64862-7|AAB52622.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC8.1 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 413 NVLDSVKVNPNLYAVGTASLAANVRKRSHSIQI*ANFYAIENIKKLGTK 267
           N+L+      +L AVG   L A  RK  H+  +      I+  K LG K
Sbjct: 65  NILNGASAVVHLAAVGHTGLIAGDRKSVHNFNVNGTKQLIKQCKALGVK 113


>AL032627-10|CAB63356.2|  248|Caenorhabditis elegans Hypothetical
           protein Y41C4A.7 protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 523 RILRHHLKINVCTFF*TVRSINSINSLANSVLSESFLTF 407
           +I  HHLKI+V  F   V + N IN L   + S  F TF
Sbjct: 100 QIRSHHLKIDVTQF---VDTFNPINLLDYFIASNPFKTF 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,411,964
Number of Sequences: 27780
Number of extensions: 213774
Number of successful extensions: 432
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)