Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3939
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.059
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 32 0.078
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 31 0.14
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 29 0.55
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 29 0.55
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.55
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.73
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.3
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 28 1.7
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 28 1.7
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.2
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 3.9
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 3.9
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 5.1
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 5.1
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 5.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 5.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.8
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 25 9.0
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.059
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
Frame = +3
Query: 393 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 569
K S+ P+ + + KVEEP+ + ++ + + TV + +E+ P A S
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTF 505
Query: 570 PNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 749
VKK P+ E E P+A AP V+E +P +S D A +
Sbjct: 506 SEDVKK---EPSEEKKLEVSDE--APKA--APLAESKKVEEKEPFYVSKDKKDISAVNLA 558
Query: 750 D 752
D
Sbjct: 559 D 559
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 32.3 bits (70), Expect = 0.078
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 435 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKID 593
I VE QPEDSK T+V +S +EK + + S D A + +++ +D
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASVTDVISSLD 578
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 31.5 bits (68), Expect = 0.14
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 465 EDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKT 644
E+S + +E+SK KP+ TD N K+I++A S A P+ T
Sbjct: 33 EESLPSILGEKSEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKAT 82
Query: 645 PEAADAPKLADNPVD-EDKPADISPDAPKA 731
P AA AP A + VD + A ++P+ KA
Sbjct: 83 P-AAVAPVEATSAVDTSEAVASMTPNKRKA 111
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 29.5 bits (63), Expect = 0.55
Identities = 27/118 (22%), Positives = 49/118 (41%)
Frame = +3
Query: 396 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 575
SS+ + +S + E+ ++ K A+ K KP AT S D ++P+
Sbjct: 1315 SSDSGKSRKRSQSVDSEDAGSKKPVKKIAASAS-GRGRKTNKPVATTIFSSDDEDDLLPS 1373
Query: 576 MVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSAD 749
+K P+ + A + K +A+ K + D+D S PKA + +A+
Sbjct: 1374 SLK-----PSTITSTKASAKNKGKKASSVKKQSPEDDDDDFIIPGSSSTPKASSTNAE 1426
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 29.5 bits (63), Expect = 0.55
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Frame = +3
Query: 399 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNM 578
S P E+ + +VE P+ E + +V E E K AT D +P
Sbjct: 447 SSSPTKESTTRKSEVEPPSPSKEIKSSHF--SVPEFKFEPKTEAT-----TDKKLNVPKF 499
Query: 579 VKKIDLAPTVESDAAAVPEIKTPEAADAP-KLADNP-VDEDKPADISPDAPKAEAKSADD 752
K V+++ E K A P K + P + E+KP+ S +PK E D
Sbjct: 500 EFKPTATADVQTNRLKENEPKPTFFAQLPSKTQETPSITENKPSFFSQLSPKREETEKKD 559
Query: 753 SA 758
+A
Sbjct: 560 NA 561
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.55
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 438 KVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESD 617
+VEE A+ S E S KPSA AE D I V I L +
Sbjct: 289 RVEEKLAKRTQSFRREDNANRERSTSRKPSADKAE-KTDKTDAIAEKVSDIRLGDGEKKS 347
Query: 618 AAAVPEI---KTPEAADAPKLADNPVDEDK 698
+ E+ KTP DAP +E++
Sbjct: 348 SETDSEVAATKTPATEDAPATNAGEAEEEE 377
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.73
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 390 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 560
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Frame = +3
Query: 405 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKP---SATDAEGSADSAAIIPN 575
+ ++ +KS+ + V+ + P+ S + QA E P S T+ A A + +
Sbjct: 527 LANSNSKSSPVAVQRVSTLPQASANK-QAKEMESKMSNSPTQKSKTEENNQAVRAILDAS 585
Query: 576 --MVKKIDL----APTVESDAAAVPEIKTP 647
M K+ DL PT ++++A+VP+I P
Sbjct: 586 ATMEKQYDLHRLPTPTSQTESASVPQIANP 615
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 27.9 bits (59), Expect = 1.7
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = +3
Query: 471 SKTEVQATVAEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEI-KTP 647
+K+E A +A EE S + A K + V SDA V + KT
Sbjct: 252 AKSESAAGLAAYELEESSSLPAIVHGNNKNARKNIATLKSKIRDIVNSDANVVEQSEKTT 311
Query: 648 EAADAPKLADNPVDEDKPAD 707
E AD + +DE KPAD
Sbjct: 312 EDADEEPETEENLDEFKPAD 331
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.9 bits (59), Expect = 1.7
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 2/124 (1%)
Frame = +3
Query: 399 SEIPDAEAKSADIKVEEPAA-QPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPN 575
S IP E +I VEE +P EV+ T A +E+ P D+E +A +
Sbjct: 142 SPIPSPETIHKNIDVEEKETIEPTTPVKEVETT-AHAEEEKGPLTPDSEYAA--RQLTEE 198
Query: 576 MVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKA-EAKSADD 752
+ K V+ V + D + V KP +++ D ++ E K +
Sbjct: 199 LANKSSQEEGVDKQLRVVEATEKEHEEDG---NEENVTVTKPVEVATDQVESKEVKKKEV 255
Query: 753 SATT 764
S TT
Sbjct: 256 SETT 259
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 445 KNQLLSLKIQKLKYKLPSLKFQKKKNL 525
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Frame = +3
Query: 396 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGS----ADSAA 563
SS DA AKS + EPA +P + + ++T + EK + TD + A
Sbjct: 898 SSSKSDA-AKSIKPQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTA 956
Query: 564 IIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDE 692
+ + V + ++ +V + P++ PK + D+
Sbjct: 957 DVNDDVGEEEVKQSVSEQVDSAQLTSEPKSESLPKSPEEKSDD 999
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +3
Query: 567 IPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAPKAEAKSA 746
+ VK + L P V + + E+K E A +LA +K A APK+ +K
Sbjct: 9 VTQAVKALVLDP-VTGEQVSKTELKKREKQRARELAKAKKQAEKAASAPVAAPKSSSKKE 67
Query: 747 DD 752
+D
Sbjct: 68 ED 69
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 329 VFWGYIVLFGLWYSGYLVVTNW 264
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 498 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAVPEIKTPEA 653
A K+ +PS + +A + PN VK + D+ P + +I PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 411 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 557
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = +3
Query: 510 KEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVD 689
KE+KP+ N KK D+A + ++ +P + DA +D P+
Sbjct: 486 KEKKPTKDLQSPLPSVEEDSSNRDKKTDIADLHTDSKVGIADVLSPISPDAALQSDGPLK 545
Query: 690 EDKPADISPDAP 725
+ K + S P
Sbjct: 546 KAKEPEESSITP 557
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +3
Query: 522 PSATDAEGSADSAAIIPNMVKKIDLAPTVESDA-AAVPEIKTPEAADAPKLADNPVDEDK 698
PS + +++ P L P+ S A P P+ A L+ P D
Sbjct: 1495 PSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAALSSAPADNSM 1554
Query: 699 PADISPDAPK 728
P SP AP+
Sbjct: 1555 PHRSSPYAPQ 1564
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 417 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 554
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 414 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 551
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.0
Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 3/112 (2%)
Frame = +3
Query: 435 IKVEEPAAQPEDSKTEVQATV--AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTV 608
+ +E A E K + T A + KE+ D A+I P
Sbjct: 70 VNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQDIAVIDTSAAP----PEG 125
Query: 609 ESDAAAVPEIKTPEAADAPKLADNPVDEDKPADISPDAP-KAEAKSADDSAT 761
S E+KT +A DA K P D KP + P AE K + S+T
Sbjct: 126 GSAGPKKDEVKTADA-DAAKDLSTPQDSSKPIEEKPMPDLGAEQKESAPSST 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,920
Number of Sequences: 5004
Number of extensions: 36563
Number of successful extensions: 165
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -