Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3938
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    31   0.14 
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    29   0.42 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    29   0.42 
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   1.7  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   5.2  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 561 LTKPQYANVYVDP----VRC*GLFYMRLVFSYIFFIYPFFEYVYYRI*ATKFCY 412
           L KP+YAN Y+DP    +      +MRL  + +FFI  F   +++      F Y
Sbjct: 439 LAKPEYANYYMDPYGKLIASPSKHWMRLFPNKLFFILSFIFCLFFLFSLVLFGY 492


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/35 (42%), Positives = 24/35 (68%)
 Frame = -2

Query: 144 VRSLKPISLLRVSREFL*IY*RSNESRRLDRILSS 40
           V + K ISL    R+FL +Y   NE++++DR+LS+
Sbjct: 315 VVNFKCISLDMALRKFLAVYVLPNETQQIDRVLST 349


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 253 LLSYLIYLCNFPVFFLIVYFIQ*KMFVYILYLVN 152
           LL Y  + C++ VF+  V++I   +F+ + YLVN
Sbjct: 179 LLGY--FQCSYSVFYASVFYILLGVFIRVFYLVN 210


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 504 FYMRLVFSYIFFIYPFFEYVYY-RI*ATKFCYLCYI 400
           F+   V+ +  F+YP+  YVY  ++ + +  YL YI
Sbjct: 24  FFHLYVWPFALFVYPYIGYVYQNKLYSEEVRYLTYI 59


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 125 LAFCGFQGNFYKFTEDQMRAEGSIEFY 45
           +  CGF   FYKFT  Q+    + E Y
Sbjct: 103 MGICGFMKTFYKFTIAQLGGSYNEEKY 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,896
Number of Sequences: 5004
Number of extensions: 45320
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)