Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3938
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    28   4.8  
L35129-3|AAA67048.1|  355|Caenorhabditis elegans xol-1 protein.        27   8.4  

>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 382 MKTSLTNVKLII-IGNDFLIIVFQDCIRLVYYH*HTAVKDFTKKLLSYLIYLCNFPVFFL 206
           +KTS++ + L   IG   L      CI LVY    + +K    +L  YL Y C+F  F +
Sbjct: 134 VKTSISMLSLSCSIGVRILFSTVAICISLVYGSKPSLIKSIVLQLSLYLDYCCHF--FSI 191

Query: 205 IVYFI 191
            + F+
Sbjct: 192 AISFV 196


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -2

Query: 495 RLVFSYIFFIYPF-FEYVYYRI*ATKFCYLCYIIKKK*E*KLR*QTSS*SLLVMTF*SLF 319
           R + S  FF+    +  +++ I  T F Y  Y++K + E K+R +       ++T  S+F
Sbjct: 88  RFMISGEFFVEKCAYLLIFFFISCTMFLYAVYLVKHETELKIRYRA------ILTLPSMF 141

Query: 318 FKIVLD*FIITNTLLSKISQKS 253
           F++++      +T++S  +  S
Sbjct: 142 FEMIVSFLSYYSTIISIFNYSS 163


>L35129-3|AAA67048.1|  355|Caenorhabditis elegans xol-1 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 18  FKIN*LLTKIKFYRAFCSHLIFS 86
           F IN +  K  F + FCSH++F+
Sbjct: 331 FHINCMFDKTLFTKIFCSHIVFT 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,319,206
Number of Sequences: 27780
Number of extensions: 236196
Number of successful extensions: 509
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)