Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3938
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   4.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.3  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   4.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 573 VFGCLTKPQYANVYVDPVRC*GLFYM 496
           ++G    P   N+Y  P+   GL+Y+
Sbjct: 256 IYGIALSPVTNNLYYSPLLSHGLYYV 281


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -2

Query: 573 VFGCLTKPQYANVYVDPVRC*GLFYMRL 490
           +FG    P   N+Y  P+    L+Y+ +
Sbjct: 254 IFGMALSPVTNNLYYSPLTSHSLYYVNM 281


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 573 VFGCLTKPQYANVYVDPVRC*GLFYM 496
           +FG    P   N+Y  P+    L+Y+
Sbjct: 254 IFGMALSPMTNNLYYSPLSSRSLYYV 279


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 89  IYRNSLETRRRLIGFRLRT 145
           +Y+N++ET+ +L  F + T
Sbjct: 36  VYKNNIETKNQLSPFNIDT 54


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -2

Query: 546 YANVYVDPVR---C*G-LFYMRLVFSYIFFIYPFFEYVYYRI 433
           Y N+ VD +R   C   + Y+  VF Y   IY FF+   +RI
Sbjct: 308 YTNIVVD-IRNEDCGSAIAYVSDVFRYGLLIYDFFKDSSFRI 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,449
Number of Sequences: 438
Number of extensions: 3246
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)