Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3934
(364 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl... 31 0.073
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 0.68
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 0.90
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 26 2.1
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 2.7
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 3.6
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 4.8
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 25 4.8
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 25 4.8
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 6.3
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 24 6.3
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 24 6.3
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 24 8.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 8.3
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 8.3
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 24 8.3
>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 30.7 bits (66), Expect = 0.073
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = -3
Query: 260 RPTFLPVVQQLLANTPWSEVALVEVWILQKIRLWRVSLVRIITKEISPSR*PYSNSSDNK 81
RP+ + + L WS + L V +L + W L++++T+E+ + +DN
Sbjct: 11 RPSAISSLLSLKKPGSWSSILLKAVGVLSRDSRWHSDLLKMLTEEMDSLNGQINTWTDNN 70
Query: 80 AYEAEYNYRYR 48
E YR
Sbjct: 71 PLLDEITKPYR 81
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 27.5 bits (58), Expect = 0.68
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +3
Query: 87 VGAVAVGLPAWGYFFSYDSDQRYSPQSYFLENPNFDQGYFGPW 215
V V V L GY F++ S + SP++Y+ N + G F W
Sbjct: 61 VQIVYVILTLIGYIFAHISHHKASPENYYKGNIHRPVGRFFMW 103
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 0.90
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 205 SDHGVFARSCCTTGRNVGRTFRSSDRQLPFT 297
+DH +F+ C +GRT + S RQL T
Sbjct: 812 NDHVIFSMRCEVLVHKLGRTSKPSPRQLVLT 842
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 2.1
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +1
Query: 157 LHSLIFWRIQTSTKATSDHGVFARSCCTT--GRNVGRTFRSSD--RQLPFTFREWSQ 315
L SL+ W T A H F CC + G+T S+D + R+WS+
Sbjct: 291 LWSLLVWLPFTKNTALGRHAQFKLDCCKSIESTMAGKTLDSTDFKEKCLVLERQWSK 347
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 2.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 141 SDQRYSPQSYFLENPNFDQGYFGPWRVCKKL 233
+D+ +SP S + Q +GPWR+ + L
Sbjct: 553 TDESHSPNSKTDNSSTHKQELYGPWRLLRLL 583
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +3
Query: 141 SDQRYSPQSYFLENPNFDQ 197
S QRY P S NPN DQ
Sbjct: 128 SQQRYMPDSAVAYNPNQDQ 146
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 132 SYDSDQRYSPQSYFLENPNFDQGYF 206
S+D ++P S L P FDQ F
Sbjct: 449 SFDGSDPWNPSSQLLSEPLFDQHSF 473
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 179 LQKIRLWRVSLVRIITKEISPSR*PYSNSSDNKAYEAEYNYRYRIQ 42
L ++R W + +I + PSR + KA + YR R++
Sbjct: 22 LSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVR 67
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 179 LQKIRLWRVSLVRIITKEISPSR*PYSNSSDNKAYEAEYNYRYRIQ 42
L ++R W + +I + PSR + KA + YR R++
Sbjct: 22 LSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYVIYRIRVR 67
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 93 AVAVGLPAWGYFFSYDSDQRYSPQS 167
A V P +G+ + YD +Q Y P S
Sbjct: 508 ASQVSTPPFGFVYYYDPNQYYVPVS 532
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 24.2 bits (50), Expect = 6.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = -2
Query: 282 TVGTSKRPSHISPCCTATSCKHAMVRS--SLGRSLDSPKNKTVESIVGQNHN*RN 124
++ S RP+ P TA+S K VRS +G +L P ++ I G N+ N
Sbjct: 179 SISMSLRPNLARPLLTASSVKSQSVRSLREVGSNLPIPTG-SLTKIDGLNNQLSN 232
>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 24.2 bits (50), Expect = 6.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 248 EMWDGRFEVPTVNCRLHFGSGRSS 319
E + G F P +N R+H RSS
Sbjct: 139 ERYPGEFLAPHINVRIHVTLSRSS 162
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 72 FICFVVGAVAVGLPAWGYFFSYDSDQRYSPQS 167
F+CFVVG+ + G A F ++ R +P +
Sbjct: 422 FLCFVVGSKSCGKTALLSSFINNNTNRLTPNT 453
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 23.8 bits (49), Expect = 8.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 51 SNTVSFHWPWLHDSASC 1
S TV+ H+ LH+ ASC
Sbjct: 1252 SETVTVHYDLLHNPASC 1268
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.8 bits (49), Expect = 8.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 200 ALVEVWILQKIRLW 159
ALVE ILQKIR W
Sbjct: 740 ALVETKILQKIREW 753
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 23.8 bits (49), Expect = 8.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 288 QLTVGTSKRPSHISPCCTATSCKHAMVRSSLGRSLDSPKNKTVES 154
+LT I+ C T + S+L R+ +SPKNK S
Sbjct: 301 ELTATNKMNDGPITKCARETINIKNLKTSNLERNQNSPKNKRTVS 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,781
Number of Sequences: 5004
Number of extensions: 28896
Number of successful extensions: 113
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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