Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3934
(364 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 29 1.5
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 28 2.0
06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319... 28 2.0
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607... 28 2.6
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 28 2.6
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 27 3.4
11_06_0092 + 19973364-19975983,19976272-19976648 27 6.0
11_01_0560 - 4413174-4414469 27 6.0
07_03_0896 + 22373348-22374946 27 6.0
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 27 6.0
05_06_0148 + 25989595-25990956 26 7.9
03_05_0775 - 27621379-27621484,27622506-27622813 26 7.9
01_06_1361 - 36663859-36663985,36664353-36664543,36664746-366650... 26 7.9
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 270 SKRPSHISPCCTATSCKHAMVRSSLGRSLDSPKNKTVESIVGQNHN 133
SK + S CT S A++ S+ S+DS ++ +VE NHN
Sbjct: 112 SKAGNDDSSECTDQSSPRAVLDISVSGSVDSDESSSVEQPAESNHN 157
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 272 VPTVNCRLHFGSGRSSRRDDPGDLLHTVSAS 364
+ ++C LH R SRR+ LLH +AS
Sbjct: 302 IEDIDCSLHLTGDRKSRRNKRRRLLHATAAS 332
>06_01_0451 +
3194919-3195416,3195560-3195580,3196282-3196467,
3197272-3197556
Length = 329
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 60 VVLGFICFVVGAVAVGLPAWGYFFSYDSDQRYSPQSYFLENPNFDQGYFG 209
+VLGF+CFV+ L WG Y+ D Q + + D Y G
Sbjct: 134 IVLGFLCFVLLFTVFCLIIWGAARPYEPDVVVKLQFGWKRSLTMDDFYAG 183
>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
6071030-6071211,6071331-6071422,6071505-6071835,
6071960-6072170,6072551-6072665,6073677-6073838,
6073938-6074610,6074766-6074972,6075134-6076254
Length = 1274
Score = 27.9 bits (59), Expect = 2.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 245 PVVQQLLANTPWSEVALVEVWILQKIRLWRVSLV 144
P ++ L A+ PW + +V QK++ W LV
Sbjct: 938 PALENLAASCPWPSMPIVAALWTQKVKRWSDFLV 971
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 104 YSNSSDNKAYEAEYNYRYRIQYLSTGHGC 18
Y N K YE +Y R+Q LS G+GC
Sbjct: 82 YDNLDAAKKYEPKYRL-IRVQLLSVGNGC 109
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 208 DHGVFARSCCTTGRNVGRTFRSS 276
+HGV +R+ CT G V R +R+S
Sbjct: 598 NHGVLSRAPCTVGLLVDRPYRNS 620
>11_06_0092 + 19973364-19975983,19976272-19976648
Length = 998
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 252 ISPCCTATSCKHAMVRSSLGRSLDSPKNKT 163
+SPC + T C +++R L S + P ++T
Sbjct: 947 VSPCSSITECLVSLLRLGLSCSQELPSSRT 976
>11_01_0560 - 4413174-4414469
Length = 431
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 300 KCKRQLTVGTSKRPS-HISPCCTATSCKHAMVRSSLGRSLDSPKNKTVESIVGQNHN*RN 124
K +R GTS+ P + P T C +RS + R L + T S G H+ R+
Sbjct: 359 KDRRCSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDRLLPEYRPSTSPSFNGDEHSNRH 418
>07_03_0896 + 22373348-22374946
Length = 532
Score = 26.6 bits (56), Expect = 6.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 57 VVVLGFICFVVGAVAVGLPAWGYFF 131
V V GF+CF VG ++ LPA Y F
Sbjct: 207 VSVAGFVCFTVGFLS--LPALAYTF 229
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 127 SLVMILTNDTLHSLIFWRIQTSTKATSDH-GVFARSCCTTGRNVG 258
S MI+ + + SL F + S D G F SC T GR VG
Sbjct: 593 SSTMIMGSTVIKSLTFHTTKKSHGPFGDETGTFFSSCLTEGRIVG 637
>05_06_0148 + 25989595-25990956
Length = 453
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 51 IAVVVLGFICF--VVGAVAVGLPAWGYFFS 134
+A VVL C + A AVG+PA+ YF S
Sbjct: 89 VAAVVLDLFCVDALDAAAAVGVPAYFYFTS 118
>03_05_0775 - 27621379-27621484,27622506-27622813
Length = 137
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = -3
Query: 182 ILQKIRLWRVSLVRIITKEISPSR*PY 102
+++KIRL+++S+++ TK + +R PY
Sbjct: 98 LIKKIRLYQISILKKSTKPSTRNRCPY 124
>01_06_1361 -
36663859-36663985,36664353-36664543,36664746-36665009,
36665215-36665373,36665476-36665679,36665765-36665983,
36666191-36666322,36666406-36666523,36666670-36666854,
36667263-36667355,36667819-36668008,36668500-36668585,
36668671-36668847,36669141-36669320,36669423-36669623
Length = 841
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 78 CFVVGAVAVGLPAWGYFFSY 137
CF+ + LPAWGY Y
Sbjct: 144 CFLDSMATLNLPAWGYGLRY 163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,789,040
Number of Sequences: 37544
Number of extensions: 184112
Number of successful extensions: 588
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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