Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3934
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical ...    29   1.3  
AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine re...    29   1.3  
L12018-11|AAA65467.1|  348|Caenorhabditis elegans Hypothetical p...    27   5.3  
AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear recep...    27   5.3  
AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical pr...    26   7.0  
U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    26   9.3  

>Z70266-5|CAA94208.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 273 TSKRPSHISPCCTATSCKHAMVRSSLGRSLDSPKNKTVESI 151
           TS RP+ ISP C         +++S G SL + +  T+E I
Sbjct: 756 TSMRPAGISPTCPRHGRAALALQNSRGNSLTAAQAPTLEEI 796


>AL023827-3|CAA19446.1|  798|Caenorhabditis elegans Hypothetical
           protein C40C9.5a protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 273 TSKRPSHISPCCTATSCKHAMVRSSLGRSLDSPKNKTVESI 151
           TS RP+ ISP C         +++S G SL + +  T+E I
Sbjct: 756 TSMRPAGISPTCPRHGRAALALQNSRGNSLTAAQAPTLEEI 796


>AF016450-6|AAB65982.1|  311|Caenorhabditis elegans Serpentine
           receptor, class t protein67 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = +3

Query: 51  IAVVVLGFICFVVGAVAVGL----PAWGYFFSYDSDQRYSPQSYFLENPNFDQGYFGPWR 218
           + +V      F+ G +   L    P+WGY FS    + +     FL  P     YF    
Sbjct: 139 VCIVCWVLFVFIAGCITQNLMFSPPSWGYDFSVPYAELFDMLEIFLTVPCLAISYFAYLT 198

Query: 219 VCKKLLYNREKCGTDVSK 272
           +   +   R + G++ S+
Sbjct: 199 IIFLICSKRNRNGSNQSR 216


>L12018-11|AAA65467.1|  348|Caenorhabditis elegans Hypothetical
           protein F22B7.1 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 308 HSRNVNGS*RSE-LRNVRPTFLPVVQQLLANTPWSEVALVEVWILQKIRLW 159
           H+ +V  + RS  L+ +RP FLP++ Q+      SE   + +W     RLW
Sbjct: 151 HNASVYNAIRSVWLKQLRP-FLPLIDQMAIQQKSSETEKMSIW----ARLW 196


>AY204185-1|AAO39189.1|  400|Caenorhabditis elegans nuclear receptor
           NHR-101 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 132 SYDSDQRYSPQSYFLENPNFDQGYF 206
           S+ S    SP SYF E+P + Q  F
Sbjct: 108 SFSSSSEMSPGSYFAESPGYAQKAF 132


>AL022272-4|CAC42310.2|  391|Caenorhabditis elegans Hypothetical
           protein H12C20.6a protein.
          Length = 391

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 132 SYDSDQRYSPQSYFLENPNFDQGYF 206
           S+ S    SP SYF E+P + Q  F
Sbjct: 99  SFSSSSEMSPGSYFAESPGYAQKAF 123


>Z78012-5|CAB01415.1|  590|Caenorhabditis elegans Hypothetical
           protein C52E4.5 protein.
          Length = 590

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 111 PAWGYFFSYDSDQRYSPQSYFLENPNFDQGYFGPWRVCKKLLY 239
           P   YF   D       ++ +++ P   +G+F  WR+  K +Y
Sbjct: 469 PEMFYFNERDEATSKHSENGYIQRPEVIEGWFYLWRLTGKTMY 511


>Z77136-9|CAI91180.1|  474|Caenorhabditis elegans Hypothetical
           protein ZC376.7c protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 99  AVGLPAWGYFFSYDSDQRYSPQSYFLENP 185
           AV   AW ++   D D    P+++F E P
Sbjct: 214 AVDWEAWNHYLESDDDVFKRPEAFFKEEP 242


>Z77136-7|CAD54177.1|  472|Caenorhabditis elegans Hypothetical
           protein ZC376.7b protein.
          Length = 472

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 99  AVGLPAWGYFFSYDSDQRYSPQSYFLENP 185
           AV   AW ++   D D    P+++F E P
Sbjct: 212 AVDWEAWNHYLESDDDVFKRPEAFFKEEP 240


>Z77136-6|CAB00883.1|  488|Caenorhabditis elegans Hypothetical
           protein ZC376.7a protein.
          Length = 488

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 99  AVGLPAWGYFFSYDSDQRYSPQSYFLENP 185
           AV   AW ++   D D    P+++F E P
Sbjct: 228 AVDWEAWNHYLESDDDVFKRPEAFFKEEP 256


>U64844-2|AAO25987.1|  846|Caenorhabditis elegans Hypothetical
           protein T22F3.3b protein.
          Length = 846

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 78  CFVVGAVAVGLPAWGYFFSYDSD--QRYSPQSYFLENPNFDQGYFGPW 215
           CF+     +G+PA+GY   Y+    ++     + +E P+    +  PW
Sbjct: 141 CFLDSMATLGIPAYGYGLRYEYGIFKQLIRDGWQIEEPDDWLRFGNPW 188


>U64844-1|AAK72092.1|  882|Caenorhabditis elegans Hypothetical
           protein T22F3.3a protein.
          Length = 882

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +3

Query: 78  CFVVGAVAVGLPAWGYFFSYDSD--QRYSPQSYFLENPNFDQGYFGPW 215
           CF+     +G+PA+GY   Y+    ++     + +E P+    +  PW
Sbjct: 177 CFLDSMATLGIPAYGYGLRYEYGIFKQLIRDGWQIEEPDDWLRFGNPW 224


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 121 PQAGSPTATAPTTKHMKPSTTTA 53
           PQ+     T PTT   KP TT A
Sbjct: 277 PQSAKTPVTNPTTSPQKPDTTEA 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,317,599
Number of Sequences: 27780
Number of extensions: 162322
Number of successful extensions: 704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)