Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3934
         (364 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   1.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   1.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   5.9  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 278 SELRNVRPTFLPVVQQLLANTPWSEVALVEVW 183
           +E+R  +  F      LLA TP++ VAL+ V+
Sbjct: 276 AEVRIAKVAFTIFFLFLLAWTPYATVALIGVY 307


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 268 RSSDRQLPFTFRE 306
           +  +R LPFTFRE
Sbjct: 508 KEDERGLPFTFRE 520


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 278 SELRNVRPTFLPVVQQLLANTPWSEVALVEVW 183
           +E+R  +  F      LLA TP++ VAL+ V+
Sbjct: 276 AEVRIAKVAFTIFFLFLLAWTPYATVALIGVY 307


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 266 FEVPTVNCRLHFGSGRSSRRD 328
           F + T  C L FGS   ++RD
Sbjct: 137 FPMDTQRCPLQFGSFGYTKRD 157


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -2

Query: 294  KRQLTV-GTSKRPSHISPCCTATS 226
            +RQ T  G  ++P H + C T TS
Sbjct: 1072 RRQHTAEGVPEQPPHDTTCTTLTS 1095


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 30  SGKILYSIAVVVLGFICFVV 89
           +G    SI ++VLG I FV+
Sbjct: 46  TGLAFPSITLIVLGSIIFVI 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,377
Number of Sequences: 438
Number of extensions: 2083
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)