Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3933
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   1.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.1  
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    26   3.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.9  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   8.5  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.5  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.5  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -1

Query: 509 FLKSSKFFGILSP*FCFLCFALVSKH-----YIS*GTVFYLFTVFTCFHYSFC 366
           FL+ + F+ IL    CFL F  +  H     Y      F+ FT+  C+HYS C
Sbjct: 29  FLQMTPFYSIL----CFLSFFALLLHLPCSIYSHTLHFFHHFTI-ACYHYSLC 76


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 189 GSVRSAKIVLFSNFELAL*QLYFFFIL-IRLNSFFKSK*ILPSALVFSLQILCNF 350
           G + S K  + S+F LA+  +  FF L    + FF+   +   +LVF+++ L NF
Sbjct: 555 GILESKKSEINSSFSLAVYVIVDFFSLWTTRHKFFRFLLLTVQSLVFAIEKLVNF 609


>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -3

Query: 246 VRVPIRSLKRERF*PTERSRSISTKILIYRILR 148
           + +P++  K  +F PT+R+  +ST  LI RI+R
Sbjct: 198 IYLPVK--KVGKFIPTKRTEGVSTSDLITRIIR 228


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 484 PKNLLLFKKIIPEI-NFAKRN 543
           P NL++FK + PE+ +F K N
Sbjct: 748 PNNLVIFKNLFPEVLSFVKSN 768


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 310 PLLWFSLYRFCVTFELYSKQKL*WKQVNTV 399
           PLLW S + FC+ +  + +  + + ++ T+
Sbjct: 78  PLLWLSSFPFCILYVGFGENSVLYHEMYTM 107


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 416 TVFYLFTVFTCFHYSFCFEYNSKVTQ 339
           T+ Y  T +     SFCF+Y+ K T+
Sbjct: 7   TLLYAGTTWKILDKSFCFKYSKKNTR 32


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +3

Query: 339 LCNFRVIFKAKAVVETSEHSKQIKHSAL*YIMF*DESET*KTESRRQNAKKLATLQKDNT 518
           L N RVI   K ++  S  S  +    + YI   D     K  S  Q+   L+ LQK+  
Sbjct: 11  LRNLRVI-DLKKILHESGVSFPVNARKIEYIRMVDRIRKNKLSSGPQHL--LSHLQKEEN 67

Query: 519 RNKFR*KESHIAARPEYIY 575
            N  +   S     P+Y+Y
Sbjct: 68  SNTSKASSSEDEIAPKYLY 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,289
Number of Sequences: 5004
Number of extensions: 46067
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)