Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3933
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402...    30   1.6  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           30   1.6  
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190           29   3.7  
01_01_0705 - 5437906-5437934,5438275-5438316,5439513-5439582,543...    28   5.0  
02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    28   6.5  
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556           27   8.7  
10_01_0017 - 218188-218261,219262-219379,220348-220932,220996-22...    27   8.7  
07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408           27   8.7  
03_03_0089 + 14359650-14359889,14360859-14361120,14361633-143618...    27   8.7  

>11_08_0005 +
           27536091-27536761,27539697-27539890,27540097-27540255,
           27540385-27541493
          Length = 710

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 454 HKKQNHGDKMPKNLLLFKKIIPEI-NFAKRNLT 549
           H+   HGD  P N+LL  K+IP++ +F    LT
Sbjct: 547 HQSIVHGDVKPANILLDDKLIPKVSDFGSAELT 579


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 433 IIYHKALCFICLLCSLVSTTAFALNITRKLHKICKEKTK 317
           I+Y K +C   +LCSL+ T     N    L +  KEKT+
Sbjct: 113 IVYLKIICMPIILCSLLVTCGDISNRDPMLSRYFKEKTQ 151


>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
          Length = 695

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 469 HGDKMPKNLLLFKKIIPEINF 531
           HGD  P N+LL  K IP+I++
Sbjct: 542 HGDVKPANILLTDKFIPKISY 562


>01_01_0705 -
           5437906-5437934,5438275-5438316,5439513-5439582,
           5439783-5439839,5441240-5441284,5441417-5441599
          Length = 141

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 219 FSNFELAL*QLYFFFILIRLNSFFKSK*ILPSA-----LVFSLQILCNFRVIFKAKAVVE 383
           F   +LA+ + Y+F  L+   S+F ++  +PSA     L   +Q +  F V+F  K V E
Sbjct: 21  FPWLDLAISEPYYFLHLVAFFSYFAARSTVPSADDGLLLRREIQAVLTFLVLFVVKIVKE 80


>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 600 FTSAGRLTDKYI---PAERRCEIPFSEIYFWYY 511
           FTS+  +   YI      RRC++P    YF+YY
Sbjct: 219 FTSSSSIGQSYILCLEVPRRCDLPNIRDYFFYY 251


>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
          Length = 693

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 469 HGDKMPKNLLLFKKIIPEIN 528
           HGD  P N+LL  K IP+I+
Sbjct: 540 HGDVKPANILLTDKFIPKIS 559


>10_01_0017 -
           218188-218261,219262-219379,220348-220932,220996-221163,
           221331-221333
          Length = 315

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 469 HGDKMPKNLLLFKKIIPEIN 528
           HGD  P N+LL  K IP+I+
Sbjct: 114 HGDVKPANILLTDKFIPKIS 133


>07_01_0983 + 8287866-8287871,8289353-8289583,8289647-8290408
          Length = 332

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 469 HGDKMPKNLLLFKKIIPEIN 528
           HGD  P N+LL  K IP+I+
Sbjct: 136 HGDVKPANILLTDKFIPKIS 155


>03_03_0089 +
           14359650-14359889,14360859-14361120,14361633-14361813,
           14362141-14362288,14362836-14363040,14363304-14363362
          Length = 364

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 195 RSRSISTKILIYRILRRSLDI*NFKFGTRLDATTFRLRKWKTD 67
           RS     + L  RI RR+LD+ +  FG        ++R W  D
Sbjct: 45  RSAQFLRRELPIRIARRALDLDSLPFGLSTKPAILKVRDWYLD 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,400,074
Number of Sequences: 37544
Number of extensions: 237494
Number of successful extensions: 539
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)