Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3933
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine rece...    32   0.27 
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    28   4.5  
U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U39472-9|AAK31390.2|  327|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 33 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 478 CLRDSVFYVSLSSQNIIYHKALCFICLLCSLVSTTAFALNITRKLHKICKEKTKAE 311
           C R+S   + L +++II + A+C   ++CSL+           K + I  E TK E
Sbjct: 171 CFRESDVVLDLKTEHIIPYLAICLTSIVCSLLLIIYVKKTQKTKTYDIESEYTKKE 226


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 443 VSKHYIS*GTVFYLFTVFTCFHYSFCF 363
           ++KH+     ++YL  V TC    FCF
Sbjct: 63  ITKHFYHMVIIYYLIFVLTCISVFFCF 89


>U97007-2|AAB52298.2|  271|Caenorhabditis elegans Hypothetical
           protein ZC196.8 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 213 VLFSNFELAL*QLYFFFILIRLNSFFKSK*I---LPSALVFSLQI 338
           +LFSN  +++ + + FF+    N FF+SK I   L S  +F+  +
Sbjct: 57  ILFSNLVISIQRAFVFFLRNWTNQFFESKAIYIWLASIYIFAFGV 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,714
Number of Sequences: 27780
Number of extensions: 248415
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)