Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3931
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-18|CAA20951.1|  347|Caenorhabditis elegans Hypothetical...    27   6.1  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    27   8.0  

>AL031627-18|CAA20951.1|  347|Caenorhabditis elegans Hypothetical
           protein Y102A5C.29 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -2

Query: 519 FFFLIRFFLLVSWVDELTAHLVLS 448
           F F++ F+ LV+W+D++   + +S
Sbjct: 256 FIFVVYFYALVAWIDDVELQVYIS 279


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 27  C*VSFGGARAVVRKSHPSWLSPCSPTCPSETG 122
           C    GG   +  +SHP W   C+  CPS  G
Sbjct: 719 CLQDCGGVMLLDTQSHPKWRMTCN-KCPSVVG 749


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,264,773
Number of Sequences: 27780
Number of extensions: 250737
Number of successful extensions: 462
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)