Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3930
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical ...    31   0.69 
AF067216-6|AAC17522.1|  400|Caenorhabditis elegans Hypothetical ...    31   1.2  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    30   2.1  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    30   2.1  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    30   2.1  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical p...    28   8.5  

>Z92782-5|CAB07190.1|  385|Caenorhabditis elegans Hypothetical
           protein F14F8.6 protein.
          Length = 385

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 427 RVKSFIQSDTGILCMIKCSITIKPYYILMFFITFYILSKSMFKVRKFNPSP 579
           R+KS I S++G+  +I  +I I P+  L FF+      +++F    + PSP
Sbjct: 160 RIKSLITSESGLCTVITITILILPFCCLSFFL------RTLFPASTWYPSP 204


>AC006747-5|AAF60510.3|  310|Caenorhabditis elegans Hypothetical
           protein Y39A3A.3 protein.
          Length = 310

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +1

Query: 478 CSITIKPYYILMFFITFYIL---SKSMFKVRKFNPSP 579
           CSIT +   I +F I FY L   + ++F+ R+F P+P
Sbjct: 19  CSITFRQMSIQLFIIFFYFLVFPASTIFQFRQFPPAP 55



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 243 CSITIKPYYVLMFFITFFIL---SKSMFKVRKFNPSPTPNLTK 362
           CSIT +   + +F I F+ L   + ++F+ R+F P+P  +  K
Sbjct: 19  CSITFRQMSIQLFIIFFYFLVFPASTIFQFRQFPPAPVSDKGK 61


>AF067216-6|AAC17522.1|  400|Caenorhabditis elegans Hypothetical
           protein C35E7.6 protein.
          Length = 400

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 348 PNLTKVLKIFMPCRPYPCFSVECKPG*GE--KFH 443
           PN+ K++ + M  +     S+ C PG GE  KFH
Sbjct: 239 PNIAKLINVTMSTKTEQAISIRCTPGIGELKKFH 272



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 583 PNLTXVLKIFMPCRPYPCFSVECKPGXGENCAKFH 687
           PN+  ++ + M  +     S+ C PG GE   KFH
Sbjct: 239 PNIAKLINVTMSTKTEQAISIRCTPGIGE-LKKFH 272


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 553 KVRKFNPSPTPNLTXVLKIFMPCRPYPCFSVECKPGXGENCAKFH 687
           K   F  SPTP  T  + +    RP  C S+E +   G    KFH
Sbjct: 497 KSTDFLQSPTPRPTVTVAVTQTARPQACVSLEVQ--AGTTMGKFH 539



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 KVRKFNPSPTPNLTKVLKIFMPCRPYPCFSVECKPG 425
           K   F  SPTP  T  + +    RP  C S+E + G
Sbjct: 497 KSTDFLQSPTPRPTVTVAVTQTARPQACVSLEVQAG 532


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 553 KVRKFNPSPTPNLTXVLKIFMPCRPYPCFSVECKPGXGENCAKFH 687
           K   F  SPTP  T  + +    RP  C S+E +   G    KFH
Sbjct: 497 KSTDFLQSPTPRPTVTVAVTQTARPQACVSLEVQ--AGTTMGKFH 539



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 KVRKFNPSPTPNLTKVLKIFMPCRPYPCFSVECKPG 425
           K   F  SPTP  T  + +    RP  C S+E + G
Sbjct: 497 KSTDFLQSPTPRPTVTVAVTQTARPQACVSLEVQAG 532


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 553 KVRKFNPSPTPNLTXVLKIFMPCRPYPCFSVECKPGXGENCAKFH 687
           K   F  SPTP  T  + +    RP  C S+E +   G    KFH
Sbjct: 497 KSTDFLQSPTPRPTVTVAVTQTARPQACVSLEVQ--AGTTMGKFH 539



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 KVRKFNPSPTPNLTKVLKIFMPCRPYPCFSVECKPG 425
           K   F  SPTP  T  + +    RP  C S+E + G
Sbjct: 497 KSTDFLQSPTPRPTVTVAVTQTARPQACVSLEVQAG 532


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +1

Query: 397 HVSV*NVNRARVKSFIQSDTGILCMIKCSITIKPY----YILMFFITFYIL 537
           ++ V N+NR R K  +  +  IL   +  +T+  Y    +IL+F I FYIL
Sbjct: 36  YIYVHNLNRHREKVEMGQNYFILFCFEVGLTVVDYFIATFILLFIILFYIL 86


>U28739-12|AAB93454.1|  200|Caenorhabditis elegans Hypothetical
           protein C17G10.7 protein.
          Length = 200

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 35  ILMFFITCFILSKSMFKVHKFNP-SPTPNLTKVLKIFM 145
           +LMFF+  F++  SM+ ++ F P   +PN+  +LKI +
Sbjct: 53  LLMFFVNTFVVFLSMYGLYNFRPVFLSPNV--LLKIIL 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,665,045
Number of Sequences: 27780
Number of extensions: 347182
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)