Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3928
         (767 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 281  CRGPYL*RQQYGANARGYGAATNE 352
            C    L  + YG NARG    T E
Sbjct: 1888 CDRDQLVNRNYGVNARGKDGMTTE 1911


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 192 LFAGTTIFRFVRRKRLSHSYTYSER 118
           LFAGT    F    ++ + YTY  R
Sbjct: 9   LFAGTVAADFQHNWQVGNEYTYLVR 33


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 703 NVTRLFVVIYQMKD*LFGLA 644
           NVT +F+V   + D + GLA
Sbjct: 98  NVTNMFIVSLAVADLMVGLA 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,249
Number of Sequences: 438
Number of extensions: 5151
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)