Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3921
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.083
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 2.4
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 25 7.2
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 7.2
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 25 7.2
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 7.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 25 9.5
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 31.9 bits (69), Expect = 0.083
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -2
Query: 350 QQKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVW 171
Q+ L TV+ + + D T ++ CH + K+F E S+ L K + W
Sbjct: 367 QRYNQKLLTVLSSNAESFNVSDMQTLGLNPCHSLDKSFVSEISQIWLKKHINWQYGKYFW 426
Query: 170 AAKTSL 153
+ SL
Sbjct: 427 LRRVSL 432
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = -2
Query: 497 LEEEFLAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIH 363
+EEEFL+FK F L+ Q + E I + + + S+R I L+H
Sbjct: 1 MEEEFLSFKNF----LQEDQDKREKIIRLSREITIQSKRMIFLLH 41
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 365 HGVPEQQKEDTLATVVETIVSKLKLMDFN 279
H V E+TL+ + E ++S +K+ DFN
Sbjct: 613 HAVKYGPSENTLSLIPELLLSPIKVTDFN 641
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 512 EVEGALSFCCLTSNSANFLLNVSVNCAMD 598
E+E AL CC S + L V C++D
Sbjct: 116 EIERALLSCCKRSKDPSILFPTDVPCSLD 144
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 128 RRVLFLSP*AKSWQPK 175
+++LF+ P AKSWQ K
Sbjct: 692 KKILFIIPEAKSWQKK 707
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 353 EQQKEDTLATVVETIVSKLKLMDFNTSNISRC 258
E Q DTLA + I+S + D++ N+S C
Sbjct: 15 EFQPTDTLAMLSAKILSDILKNDYSPENVSLC 46
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 500 WRVFEVEGALSFCCLTSNSANFLLNVSVNCAMDC*IPSIV 619
W E+ ++ FCCL S++ ++N N + I SI+
Sbjct: 302 WTPVELRHSIFFCCLRCLSSSRIVNSETNVMVPYMIYSIL 341
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 186 QVHVA*LQKNGPRSFWSKCFTHSVTPGNVRCIKV---HKFQFTDNGF 317
Q H + K +W++ F +V P +V I++ KF+ D GF
Sbjct: 39 QTHTTKVIKKSVNPYWNEGFEVTVKPSSVISIRLFDQKKFKKKDQGF 85
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 459 QSESFKSKKLFFQCGECLK 515
+ ESF K+L +QC C+K
Sbjct: 208 KQESFLRKQLLYQCKSCVK 226
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 532 FLLSYLKFCKFLIECISQLCHGLL 603
FLLS+L C+ LIE ++ C L+
Sbjct: 75 FLLSHLSLCQNLIEFLTARCPRLV 98
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 215 ILLKLCDMNLRSKVWAAKTSLKGSGITLSEFL 120
I +KL + LRS +WA ++++ +G S L
Sbjct: 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPIL 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,975
Number of Sequences: 5004
Number of extensions: 51847
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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