Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3921
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448... 31 0.80
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 29 2.4
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 29 4.3
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 29 4.3
03_02_0907 - 12297523-12297891,12298051-12298200,12298356-122984... 28 7.5
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029... 27 9.9
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 27 9.9
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 27 9.9
>01_01_0602 -
4484972-4485450,4485949-4485997,4486108-4486237,
4486636-4486778,4486819-4486877,4487167-4487200,
4487489-4487629,4487719-4487907,4488027-4488122,
4488163-4488225,4488588-4489097
Length = 630
Score = 31.1 bits (67), Expect = 0.80
Identities = 26/90 (28%), Positives = 43/90 (47%)
Frame = -2
Query: 347 QKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVWA 168
+K+ TLAT +E + K + ++ T+N R + +T + RP LK+ + R V A
Sbjct: 480 KKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQYTSTKGRPSALKVVNQKGRRGV-A 538
Query: 167 AKTSLKGSGITLSEFLTKRRHDIFMSARQR 78
+T K S I ++RR I R +
Sbjct: 539 LQT--KSSRIVKDTTSSRRRSPIRSQPRSK 566
>04_04_0350 +
24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -2
Query: 344 KEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVWAA 165
K D + V ++ + + ++ +S +R + TPERS + +L D +L + W
Sbjct: 284 KHDVIRETVPSLHVVAEETENDSKTVSTSNRENTSGTPERSFSSVHQLEDSDLSDEDWND 343
Query: 164 KTSLKGSGIT 135
+ S GSG +
Sbjct: 344 EDSGSGSGFS 353
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -2
Query: 365 HGVPEQQKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNL 186
HG +++ +LAT T S + N + I + GK T + RPI L+ C + +
Sbjct: 943 HGTQLKRRFFSLATGFTT--SGADIERINRAYIVLIQKPGKENTVDGYRPISLQNCSVKI 1000
Query: 185 RSKVWAAK 162
SKV A +
Sbjct: 1001 LSKVLATR 1008
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 28.7 bits (61), Expect = 4.3
Identities = 28/82 (34%), Positives = 37/82 (45%)
Frame = -2
Query: 470 TFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQKEDTLATVVETIVSKLKL 291
+F L R L TQV+ + ++E HSR +I L+ Q KE + AT VE V
Sbjct: 265 SFDLMTYR-LSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPS- 322
Query: 290 MDFNTSNISRCHRMGKTFTPER 225
D NI R + PER
Sbjct: 323 -DATNPNI-RTSMGSAAYAPER 342
>03_02_0907 -
12297523-12297891,12298051-12298200,12298356-12298463,
12298693-12298815,12299039-12299312,12304895-12304973,
12305222-12305256,12305372-12305429,12306185-12307274
Length = 761
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 486 LFFQCGECLKWRERSVSAVLP 548
L ++ GEC KWRER ++ P
Sbjct: 149 LSYKVGECCKWRERELTCSPP 169
>07_03_0960 -
22902279-22902530,22902604-22902726,22902855-22902941,
22903017-22903068,22903197-22903321,22903476-22903684,
22903990-22904191,22906205-22906309,22907264-22907325,
22907625-22907814,22907887-22907982,22908069-22908171,
22909117-22909220,22910239-22910325,22911238-22911323,
22911410-22911502,22912586-22912673,22912786-22912898,
22912989-22913111,22914473-22914524,22915185-22915286,
22915539-22915582,22915667-22915740,22915825-22915916,
22916566-22916633,22918572-22918647,22918767-22918952
Length = 997
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 621 LTMEGIQQSMAQLTDTFNKKFAEFEVRQQKLS 526
+TM G M L +T K AEFEV+ + S
Sbjct: 614 ITMVGYNDKMRTLLETVIGKIAEFEVKADRFS 645
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 621 LTMEGIQQSMAQLTDTFNKKFAEFEVRQQKLS 526
+TM G M L DT K AEFEV+ + +
Sbjct: 631 ITMVGYNDKMRTLLDTVIGKIAEFEVKVDRFA 662
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 27.5 bits (58), Expect = 9.9
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = -2
Query: 470 TFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQKEDTLATVVETIVSKLKL 291
+F L R L TQV+ + ++E HSR +I + Q KE + AT VE V +
Sbjct: 240 SFDLMTYR-LSTQVKPLIWVEAQVEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPE- 297
Query: 290 MDFNTSNISRCHRMGKTFTPER 225
D NI R + PER
Sbjct: 298 -DSTNPNI-RTSMGSAAYAPER 317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,955,706
Number of Sequences: 37544
Number of extensions: 328259
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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