Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3921
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-6|AAB70330.1|  135|Caenorhabditis elegans Hypothetical ...    29   2.2  
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    28   6.7  
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    28   6.7  
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    28   6.7  
U29380-12|AAR12986.1|  485|Caenorhabditis elegans Hypothetical p...    27   8.8  
U29380-11|AAR12987.1|  501|Caenorhabditis elegans Hypothetical p...    27   8.8  

>AF024494-6|AAB70330.1|  135|Caenorhabditis elegans Hypothetical
           protein C38C3.6 protein.
          Length = 135

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 42  AAVPSPAPGYSEALTCRHKNIMTSFSQELGECYS 143
           A V   AP Y EA+TCR  NI      +L   Y+
Sbjct: 52  APVNEEAPPYGEAVTCRTDNIFAITEPDLSRYYN 85


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = -2

Query: 482 LAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVV 318
           ++ +TF +N L  L     LI++EN+ +EM    ++LL H +           +     V
Sbjct: 56  ISTETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAV 112

Query: 317 ETIVSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILL 207
           E IV  L+ MD F++            FTP+ + PI+L
Sbjct: 113 EIIVEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVL 149


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = -2

Query: 482 LAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVV 318
           ++ +TF +N L  L     LI++EN+ +EM    ++LL H +           +     V
Sbjct: 56  ISTETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAV 112

Query: 317 ETIVSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILL 207
           E IV  L+ MD F++            FTP+ + PI+L
Sbjct: 113 EIIVEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVL 149


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = -2

Query: 482 LAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVV 318
           ++ +TF +N L  L     LI++EN+ +EM    ++LL H +           +     V
Sbjct: 56  ISTETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAV 112

Query: 317 ETIVSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILL 207
           E IV  L+ MD F++            FTP+ + PI+L
Sbjct: 113 EIIVEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVL 149


>U29380-12|AAR12986.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK546.2a protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 320 VETIVSKLKLMDFNTSNISRCHRM 249
           +  I++K +L+  NT+N+ RC R+
Sbjct: 157 ISVILNKNRLLSLNTANLLRCERL 180


>U29380-11|AAR12987.1|  501|Caenorhabditis elegans Hypothetical
           protein ZK546.2c protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 320 VETIVSKLKLMDFNTSNISRCHRM 249
           +  I++K +L+  NT+N+ RC R+
Sbjct: 157 ISVILNKNRLLSLNTANLLRCERL 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,732,597
Number of Sequences: 27780
Number of extensions: 300705
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)