Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3919
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    29   0.31 
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    28   0.93 
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        27   2.2  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    26   3.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   5.0  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   6.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   8.7  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 281  FLNSVSPLPMKL-SCTRGKRQARTPNSLVSTLYGRLLTINLLFEYKSISIYIKMN 442
            F+N VSPL +K  SC       R+  SL  TLY   +  +  +EY   +I ++ +
Sbjct: 1246 FIN-VSPLLLKCPSCNATSFSLRSVKSLKETLYANTVECDCGYEYSDFTIILQFS 1299


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -1

Query: 474 PSSFSETNEQQFIFIYIDIDLYSNSKLIVKRRPYKVETSELGVRACLFPRVQLNFIGKGE 295
           PS   +    + + +YID    S + L++K  P    TSE  V A ++   Q+N +    
Sbjct: 336 PSLRGQIKSLEVLLMYID----SRADLLLKSNPQVSPTSERQVWAKIYRDSQINILQDSI 391

Query: 294 TLFKN 280
           T  KN
Sbjct: 392 TYVKN 396


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +1

Query: 73  SSISSSLDATACGSANAPVPTLSIIPN 153
           SS+S+S+ +T+ G+ N+P  + + IPN
Sbjct: 364 SSLSNSMSSTSNGALNSPSYSQAAIPN 390


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 13  TKKRNFINNKSTRYSVRDLNSSISSSLDAT 102
           +KKR+ +N     YS R + S+ISS+  AT
Sbjct: 230 SKKRDNVNIPKRTYSARSIPSNISSTNVAT 259


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -1

Query: 414  LYSNSKLIVKRRPYKVETSELGVRAC--LFPRVQLNFIGKGETLFKNSSLRVQNNTTK 247
            L   + L++ R  YK ++S L       L PR++   +GKG+ + K + L+   + TK
Sbjct: 1080 LTKRNLLMICRVLYKAKSSLLVTLKIPSLIPRLRAIHLGKGKIVIKKAPLKQITSKTK 1137


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 271 TSSKQHHEAHETLFTVIS 218
           TSS  HH+ H+ ++ VIS
Sbjct: 174 TSSGLHHDFHDNIYAVIS 191


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 187 SCHNGEINKLRGWG*W 140
           + HNGEIN LRG   W
Sbjct: 300 AAHNGEINTLRGNKNW 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,821
Number of Sequences: 5004
Number of extensions: 38424
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)