Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3919
         (510 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664...    32   0.23 
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486...    32   0.23 
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225...    32   0.23 
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284...    28   3.8  
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304...    27   8.8  
02_05_0011 + 24953472-24954506                                         27   8.8  

>05_02_0105 +
           6644264-6644344,6645573-6646097,6646185-6646410,
           6646498-6646875,6647035-6647417,6647513-6648130
          Length = 736

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 352 RRASLSFSPGATQFHRQRGNAIQKFQPTSSKQHHEAHETLFTVISDSVKVLTNKGSCH 179
           R   +++S  ATQF  +   +++K +PT+ K   + H+   T ++D + +  N+   H
Sbjct: 430 REKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVH 487


>04_01_0097 - 998766-999383,999479-999861,1000021-1000398,
            1000486-1000711,1000799-1001323,1003032-1003164,
            1004353-1004435,1004645-1005349,1005483-1005556,
            1006290-1006392,1006485-1006727
          Length = 1156

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 352  RRASLSFSPGATQFHRQRGNAIQKFQPTSSKQHHEAHETLFTVISDSVKVLTNKGSCH 179
            R   +++S  ATQF  +   +++K +PT+ K   + H+   T ++D + +  N+   H
Sbjct: 850  REKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVH 907


>03_01_0291 -
           2250349-2250966,2251062-2251444,2251604-2251981,
           2252147-2252294,2252382-2252906,2253990-2254112,
           2254151-2254205,2254510-2254640
          Length = 786

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 15/58 (25%), Positives = 31/58 (53%)
 Frame = -3

Query: 352 RRASLSFSPGATQFHRQRGNAIQKFQPTSSKQHHEAHETLFTVISDSVKVLTNKGSCH 179
           R   +++S  ATQF  +   +++K +PT+ K   + H+   T ++D + +  N+   H
Sbjct: 480 REKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRVNRSQVH 537


>11_01_0374 -
           2843405-2843508,2844134-2844239,2844327-2844409,
           2844886-2845078,2845527-2845662,2846185-2846264,
           2846348-2846932,2847058-2847126,2847203-2847347,
           2847442-2847542,2848208-2849066,2849397-2849536,
           2849606-2849783,2849885-2850287,2850770-2850833,
           2851223-2851278,2851470-2851572
          Length = 1134

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 314 LSCTRGKRQARTPNSLVSTLYGRLLTINLLFEYKSISIYIK 436
           LS T     A    S++ TL GR+L ++LLF    +++ IK
Sbjct: 701 LSATSKNYSAGKSTSVMKTLAGRILVLSLLFMLTIMNVPIK 741


>12_01_1109 -
           11726818-11727719,11728225-11728394,11730407-11730483,
           11730559-11730645,11730730-11730816,11731887-11731991,
           11732133-11732168,11733636-11733754,11733862-11734067,
           11735854-11735906,11735986-11736153,11736507-11736591,
           11737845-11738023,11738939-11739070,11739209-11739295,
           11739920-11739972,11740820-11740892,11741791-11742442,
           11743165-11743229
          Length = 1111

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = -1

Query: 474 PSSFSETNEQQFIFIYIDI-DLYSNSKLIVKRRPYKVETSELGVR---ACLFPRVQLNFI 307
           P  +SET  +QF   Y ++ D ++   L  +    K   +E G+    + +  +  L+ +
Sbjct: 388 PGEYSETFVEQFTIFYSELKDFFNAGSLFEQLESIKESLNESGLEVLSSFVETKRSLDQV 447

Query: 306 GKGETLFKNSSLRVQNNTTKRM 241
              E L KN ++++   T + +
Sbjct: 448 DHAEDLDKNDTIQILMTTLQSL 469


>02_05_0011 + 24953472-24954506
          Length = 344

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
 Frame = -1

Query: 159 YEVGDN-GEGR----HRCISRATG 103
           YE+G+  G GR    HRC SRATG
Sbjct: 22  YEIGEEIGRGRFGVVHRCTSRATG 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,261
Number of Sequences: 37544
Number of extensions: 245079
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)