Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3919
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.20 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.45 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.45 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.45 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 53  ILFVI*TVQFPHPLMRPPVALLMHLCRPSP 142
           IL  I  ++FP  + R   AL+  LCR +P
Sbjct: 577 ILKGIDAIEFPRSITRNATALIKKLCRDNP 606


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 202 LTNKGSCHNGEINKLRGW 149
           L NK SCH+G  +   GW
Sbjct: 490 LRNKKSCHSGYKDSFAGW 507


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 202 LTNKGSCHNGEINKLRGW 149
           L NK SCH+G  +   GW
Sbjct: 490 LRNKKSCHSGYKDSFAGW 507


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 202 LTNKGSCHNGEINKLRGW 149
           L NK SCH+G  +   GW
Sbjct: 490 LRNKKSCHSGYKDSFAGW 507


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 237 VSCASWCCFELVG 275
           +SC  WCC  L G
Sbjct: 9   MSCCCWCCDNLGG 21


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 308 SAKGKRYSKIPAYEFKTTP 252
           SA+G+   KIP+Y+  +TP
Sbjct: 875 SAQGRAILKIPSYKPASTP 893


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 320 NSISSAKGKRYSKIPAYEFK 261
           N ++  +  R+S +P Y++K
Sbjct: 305 NGVTFPQRNRFSSLPYYKYK 324


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 320 NSISSAKGKRYSKIPAYEFK 261
           N ++  +  R+S +P Y++K
Sbjct: 305 NGVTFPQRNRFSSLPYYKYK 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,272
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)