Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3914
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   6.1  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.1  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   8.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.1  

>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 181 PKKTSQNKQFTVHHSMFPTKKHFPFKALFRCYLREWTTYYYRPLTSAISPGVA 339
           P     N Q   +  +    ++F FKA      REW T+ +R   +A+   +A
Sbjct: 2   PSGAQGNTQSAAYKRIVNVSRNFQFKAALNKDTREW-TFQHRSSGTALYSAIA 53


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 169 NSQ*PKKTSQNKQFTVH--HSMFPTKKHFPFKAL 264
           NSQ P++ S  K + V   H++FP K HF   AL
Sbjct: 47  NSQ-PEEVSSKKPWYVDEKHNLFPKKAHFDAVAL 79


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 29   QQNLPKKIHTLWFQGARKAKVFYVQGYTPPHVT 127
            QQ LP  +    F+   KA ++YV  Y   H+T
Sbjct: 997  QQLLPADLTMHDFENPAKAFMYYVDSYAISHIT 1029


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +1

Query: 181 PKKTSQNKQFTVHHSMFPTKKHFPFKALFRCYLR-EWTTYYYRPLTSAISPG 333
           P +    K + VH+S  P +   PF      Y+  +W    YRP +  +SPG
Sbjct: 107 PLRFEDTKFYFVHYSNSPIE---PFAKPNISYVNPQWNELDYRPDSQKLSPG 155


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 267 KECFERKVLFCREHGVMYCEL 205
           KE FE+   F REH   +C+L
Sbjct: 238 KELFEKSGSFIREHYTEFCDL 258


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 300 IISCPLT*ITPKECFERKVLFCREHGVMYCELF 202
           I SCPL  +TP+E  E+   F ++    Y E F
Sbjct: 466 IFSCPLFLVTPEELEEQYTDFFKKLKEKYGEFF 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,719
Number of Sequences: 5004
Number of extensions: 57545
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)