Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3914
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1473 - 30382528-30382731,30382814-30382930,30383048-303831...    31   1.2  
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109...    29   3.7  
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885...    29   4.8  

>06_03_1473 -
           30382528-30382731,30382814-30382930,30383048-30383129,
           30383211-30383278,30383444-30383545,30383994-30384122,
           30384561-30384623,30384781-30384897,30385210-30386116,
           30386225-30386494,30386929-30386998,30387114-30387273
          Length = 762

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
 Frame = -1

Query: 351 FPRESNTWTY--C*RQWTVI 298
           FPRE N W+Y  C RQW+++
Sbjct: 538 FPREGNNWSYDKCRRQWSLV 557


>05_01_0162 -
           1095020-1095202,1096114-1096188,1096939-1097039,
           1097467-1097577,1097704-1097807,1098260-1098493,
           1098583-1099304
          Length = 509

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 475 IDHFFKRLPFRKDIELQNVFNIFIFVSSISG 383
           I+H    L  ++DI + N+ N FIF  +I+G
Sbjct: 201 IEHIIFLLSIQRDIAMNNLTNTFIFSQTITG 231


>05_07_0328 +
           29286109-29286120,29286982-29287146,29288427-29288589,
           29288625-29288903,29289047-29289122,29289725-29289787,
           29292116-29292164,29292413-29292504,29293017-29293068,
           29293209-29293271,29293382-29293431,29293941-29294016,
           29294444-29294656,29294763-29294869,29294966-29295074,
           29295489-29295689,29295773-29296033,29296154-29296171,
           29296287-29296397,29296755-29297030,29297108-29297382,
           29297814-29298165,29298371-29298655,29298715-29299261,
           29301658-29301781,29301871-29301946,29302062-29302136,
           29302300-29302353,29302833-29302892,29302977-29303093,
           29303228-29303361,29303480-29303682,29303879-29303976,
           29304358-29304461,29304537-29304702,29304803-29304925,
           29305047-29305129,29305217-29305358,29305523-29305549,
           29305784-29305854,29305930-29306518
          Length = 2046

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 25/84 (29%), Positives = 37/84 (44%)
 Frame = -3

Query: 472 DHFFKRLPFRKDIELQNVFNIFIFVSSISGLDGHLNFKFFISARKQHLDLLLTSMDGNNK 293
           D  FK +PF    +L+  FNI +    +      L+ KF     K  + +L      +NK
Sbjct: 334 DGLFKVIPFDNKGQLKEAFNIRLEELQV------LDIKFLYGCVKPTIVVLYQ----DNK 383

Query: 292 LSTHVNNTERVL*KESAFLSGTWS 221
            + HV   E  L K+  F+ G WS
Sbjct: 384 DARHVKTYEVAL-KDKDFVEGPWS 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,159,352
Number of Sequences: 37544
Number of extensions: 295799
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)