Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3912
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    92   5e-21
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             36   5e-04
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              23   3.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.6  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   8.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 91.9 bits (218), Expect = 5e-21
 Identities = 45/87 (51%), Positives = 58/87 (66%)
 Frame = +3

Query: 291 EQGTDGSYKTSYETGNNIQAQEQGYLKTVGDNQDNTALVQQGSYTYTAPDGQVITVEYTA 470
           E   DG+Y  ++ET N I  QE G  K V DN+  T +V QGS +YTAPDGQ +++ Y A
Sbjct: 35  EVNFDGNYINNFETSNGISHQESGQPKQV-DNE--TPVVSQGSDSYTAPDGQQVSITYVA 91

Query: 471 DEFGFRVSGDHIPTPPPVSAEIQKGLD 551
           DE GF+V G HIPT PP+  EIQ+ L+
Sbjct: 92  DENGFQVQGSHIPTAPPIPPEIQRALE 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 108 PQRKVSLKPEQQVEDQLPL-EQNFNNYQPQQQEYRSAKPVDDFRPKVQLETS 260
           PQ +   +P+QQ + Q    +Q     Q QQQ+ R     DDF P ++ E S
Sbjct: 822 PQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDDFNPNIEEEAS 873



 Score = 26.6 bits (56), Expect = 0.23
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 111  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQE---YRSAKPVDDFRPKVQLETSTYIPIIR 281
            Q+    +P+QQ + Q   +    + QPQQQ+    +  +     +P+ Q +    +  + 
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLV 1557

Query: 282  FDKEQGTDGSYKTSYETGNNIQAQEQ 359
               ++G +     S E  N+ Q Q+Q
Sbjct: 1558 VQLQRGYNSGNNRSGEQANSQQQQQQ 1583



 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 111  QRKVSLKPEQQVEDQLPLEQNFNNYQPQQQEYRSAK 218
            QR  ++  +QQ + Q   +Q     Q QQQ+   A+
Sbjct: 1202 QRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAR 1237



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 564  GIKANQERAAIEAKSNPEAARQQEEKAALDYKGQYYQH 677
            G++  Q  AA+  +   +  +QQ+++     + Q  QH
Sbjct: 1197 GLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQH 1234


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 423 TYTAPDGQVITV 458
           +Y  PDGQVIT+
Sbjct: 14  SYELPDGQVITI 25


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 474 EFGFRVSGDHIPTPP 518
           E+G RV  D I TPP
Sbjct: 424 EYGIRVERDPILTPP 438


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 129 KPEQQVEDQLPLEQNFNNYQPQQQEY 206
           +P+QQ + Q   +Q     Q QQQ +
Sbjct: 439 QPQQQQQQQQQQQQQQQQQQQQQQHW 464


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
          protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 8  HEGATRLPHVKPHIRNHEAADRNLRSYC 91
          H+  TR  H+K H+R H        S+C
Sbjct: 16 HKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 9   TRVPHGCRT 35
           TR PHGC T
Sbjct: 275 TRYPHGCST 283


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 378 GDNQDNTALVQQGSYTYT 431
           G ++   A +Q G Y YT
Sbjct: 43  GSDEKRQAAIQSGDYNYT 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,235
Number of Sequences: 438
Number of extensions: 4665
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)