Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3909
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    27   5.3  
AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.     27   5.3  

>Z70686-9|CAA94614.3|  915|Caenorhabditis elegans Hypothetical
           protein R10H10.7 protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -2

Query: 407 IHKILSNATTSYSYL*TFIIFIHQFNKHSIDSFINDKNLQKYIIRLA-RVETECGSRVGR 231
           +HK+  N T  +    + IIF +  N  S        +++K + ++  +++TECG   G+
Sbjct: 263 MHKMFDNQTVEWRQNGSDIIFEYMRNLLSFGFNHRVFDVKKAMCQMIIKIQTECGQLFGK 322

Query: 230 RLSRVTLQLNQIIY 189
           R     L +NQ  Y
Sbjct: 323 R--NYNLLMNQYFY 334


>AL034364-1|CAA22251.1|  272|Caenorhabditis elegans Hypothetical
           protein W06D4.3 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 202 FSCNVTRDRRRPTRLPHSVSTRANLIIYFCRFLSLINESIECLL 333
           F+C     + R   +P  V    N ++ F R +S+ N S+E LL
Sbjct: 206 FNCTANEVQARLDEVPMIVPHHENELLKFSREVSIFNNSVENLL 249


>Z37092-8|CAA85460.2|  327|Caenorhabditis elegans Hypothetical
           protein F44F4.7 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 253 SVSTRANLIIYFCRFLSLINESIECLL 333
           ++STRAN  +  C +L++ +  I CL+
Sbjct: 178 NISTRANTFLEICSYLTVAHIIINCLI 204


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 15
           protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 356 FIIFIHQFNKHSIDSFINDKNLQKYIIRLARVETECGSRVGR 231
           F +F ++FN      +  +KNL + ++R++ V    G+RV R
Sbjct: 338 FELFSNEFNSCFYLEYFKNKNLNEDLLRVSHVWVAVGNRVLR 379


>AY037792-1|AAK94756.1|  327|Caenorhabditis elegans SRA-12 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 253 SVSTRANLIIYFCRFLSLINESIECLL 333
           ++STRAN  +  C +L++ +  I CL+
Sbjct: 178 NISTRANTFLEICSYLTVAHIIINCLI 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,256,741
Number of Sequences: 27780
Number of extensions: 147298
Number of successful extensions: 317
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)