Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3908
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    28   1.3  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.0  

>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -3

Query: 130 ELIIIE*RQDAFISSGTKHRLRLFSPNPHSV-----FKGNAVWPLVP 5
           + I+I  + +AF S  +   L LF+PN H +     F+   ++PL+P
Sbjct: 255 QCIVIHPKYEAFRSPCSFAYLSLFNPNKHDLVDNPTFRWQTIYPLIP 301


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -1

Query: 501 FKKYYSLCHSGIA*FPNSERIFQIGSVISEPIQYKQT 391
           F+K  S   SG+  F ++E+IF +G+   +  QY++T
Sbjct: 569 FEKNNSFMDSGLKGFLHNEKIFVLGNKDEQIRQYRKT 605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,667
Number of Sequences: 5004
Number of extensions: 59102
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)