Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3908
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U41036-1|AAA82384.1|  315|Caenorhabditis elegans Hypothetical
           protein T14E8.2 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = -2

Query: 287 PIESADDNRDCNSAQESRKHYNSKKKTCKKSLNSIYSILVYLFHEDIKVQRY*INY--NR 114
           P    DD+RDC+ A++   H+   KK    ++  + + ++ L   + K+Q   + +  ++
Sbjct: 160 PSALCDDHRDCHGAEDEDPHFCMFKKLEDAAMRRVQAEILVLVQNNRKLQPGVVVHIPDK 219

Query: 113 IETGRVHKLR 84
            +TG V  LR
Sbjct: 220 PDTGIVEPLR 229


>Z92812-6|CAB07280.1|  372|Caenorhabditis elegans Hypothetical
           protein T03E6.6 protein.
          Length = 372

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 280 SLPMIIAIVTAPKNRENITIRRKKRVRSH*IAFIVYLSIYF 158
           ++ ++I ++   K+R+N+  RR+   R H    ++ LSI F
Sbjct: 258 AIVLVIRLLKMRKDRKNVISRRQNVKREHTTTLVILLSITF 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,214,402
Number of Sequences: 27780
Number of extensions: 319324
Number of successful extensions: 673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)