Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3904
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 83 4e-17
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 29 0.55
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 29 0.73
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 1.3
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 28 1.7
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 27 2.9
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 27 3.9
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 27 3.9
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 5.1
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 26 5.1
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 26 6.8
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 9.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 9.0
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 9.0
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 83.0 bits (196), Expect = 4e-17
Identities = 44/113 (38%), Positives = 70/113 (61%), Gaps = 4/113 (3%)
Frame = +2
Query: 5 SKSFIEEIKKQGAEQAS-SIIGQFGVGFYSAFMVADKIEVFTRSSKGDSPGYQWSSDGSG 181
+KS ++ + A A S+IGQFGVGFYSA++VADK++V S D Y W S G
Sbjct: 98 AKSGTKQFMEAAASGADISMIGQFGVGFYSAYLVADKVQVV--SKHNDDEQYIWESSAGG 155
Query: 182 TYEIQ-EADGVEI--GTKIVVYLKTDCREFADDDTVKSIIKKYSNFVSSPIFL 331
++ + + DG + GT+I +++K D ++ ++ T+K +KK+S F+S PI L
Sbjct: 156 SFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISYPIQL 208
Score = 76.6 bits (180), Expect = 4e-15
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = +2
Query: 338 DQVNSIKPLWLFEPKEITQEQHIEFYKFISNSYDKPRFTLHYKTDAPLSIRSILYVPEGK 517
+++N KP+W P E+T+E++ FYK ++N ++ H+ + L R+IL+VP
Sbjct: 263 EELNKTKPIWTRNPSEVTKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFRAILFVPRRA 322
Query: 518 P-GLFELSRDSDVGVALYSRKILIKSKAENILP*MVAIWLKGVVDS 652
P LFE R + + LY R++ I E ++P + ++KGVVDS
Sbjct: 323 PMDLFEAKRKKN-NIKLYVRRVFITDDCEELIPEWLG-FIKGVVDS 366
Score = 30.7 bits (66), Expect = 0.24
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +3
Query: 612 PKWLRFG*RGL*TPEDIPLNLSRELV 689
P+WL F +G+ ED+PLNLSRE++
Sbjct: 354 PEWLGFI-KGVVDSEDLPLNLSREML 378
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 29.5 bits (63), Expect = 0.55
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 236 YLKTDCREFADDDTVKSIIKKYSNFVSSPIFLNNDQVNSIKPLWLF 373
Y+++ E ++DD S Y N++ +L + VNS+K + F
Sbjct: 274 YIRSQSTETSEDDDSSSFDDDYQNYLKQEPWLAHSSVNSLKDVAKF 319
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 29.1 bits (62), Expect = 0.73
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 343 LVVVQKNRAADKIAVFLNDTFYCIIICKFSAVCF*IYNYFCANF 212
LV+V +++A +N+ FY ++ F+ + IYN F AN+
Sbjct: 1054 LVLVHGRWDYNRVAEMVNNFFYKSVVWTFTLFWYQIYNNFDANY 1097
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 28.3 bits (60), Expect = 1.3
Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Frame = +2
Query: 11 SFIEEIKKQGAEQASSIIGQFGVGFYSAFMVADKIE---VFTRSSKGDSPGYQWSSDGSG 181
++ + ++ AE+A S + + GV F +A+ IE V T K SS GS
Sbjct: 188 NYSKTTNQKEAEKAVSQLFEVGVRFND--FIAEGIEPSVVHTLFLKLGLDSSSASSQGSL 245
Query: 182 TYEIQEADGVEIGTKIVVYLKTDCREFADDDTVKSIIKKYSNFVSSPIFLNNDQVNSIKP 361
T +A KI L +D D+ +++ + N +S P+ +D ++S KP
Sbjct: 246 TLSADKAARSAKLRKIDSNL-SDTHILPGDNGTPTVLPERKNLISLPLLKQDDWLSSSKP 304
Query: 362 LWLFEPKEITQ 394
P + +
Sbjct: 305 FGSSTPNVVIE 315
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -1
Query: 307 IAVFLNDTFYCIIICKFSAVCF*IYNYFCANFNSIS-FLNFIC 182
I+V + F C+ SA ++N+FC N ++IS FL +IC
Sbjct: 384 ISVAVTVLFACLAFLNASASAAVVFNWFC-NLSTISGFLAWIC 425
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 268 ICKFSAVCF*IYNYFCANFNSISFLNF 188
IC + + Y+ FC FNS+ FLNF
Sbjct: 255 ICSYE-IALQDYSEFCKLFNSVDFLNF 280
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 312 TKLLYFLMILFTVSSSANSLQSVFKYTTIFVPISTPS 202
+++LYFL +L +S S+ + S +I PI+ PS
Sbjct: 94 SQILYFLYLLSPISQSSRDVSSHLLDESISNPINIPS 130
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 299 YSNFVSSPIFLNNDQVNSIKPLWLFEPKEITQEQHIEFYKFISNSYDKPRFTLHYKTDAP 478
Y++F + + + S+ W+F+PK I Q H++ ++ S+ H
Sbjct: 96 YADFGKNKNLFQDFSIESVPNFWIFKPKSI-QAIHVDLSHGVTASHLAAIVEKHTG---- 150
Query: 479 LSIRSILYVPEGKPGLFELSRDSDVGVAL-YSRKILIK 589
I I+Y + + VG AL ++RKI++K
Sbjct: 151 -KIADIVYKQDQAKRVGAFLSYIIVGAALFFTRKIIVK 187
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 2 RSKSFIEEIKKQGAEQASSIIGQFGVGFYSAFMVADKIEVFTRSSKGDSPGY 157
R SF++ +Q ++A+ I FY + D+ T +SK D G+
Sbjct: 20 RRVSFVKATSEQSLDEATFIEKGSAQAFYHSLFENDRDNSHTMNSKRDEAGF 71
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 26.2 bits (55), Expect = 5.1
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Frame = +2
Query: 110 KIEVFTRSSKGDSPGYQWSSDGSGTYEIQEADGVEIGTKIVVYLKTDCREFADDDTVKSI 289
K VFT K D ++W S G A + + +V L D E D KS+
Sbjct: 562 KTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVILMID--EKMDPPVAKSM 619
Query: 290 IKKYSNFVSSPIFLNNDQVNSIKPLWLFEPKEITQEQHIE--FYKFISNSYDKPR 448
+K ++ + S L+ + + L L + I+ E +E F++F NS + P+
Sbjct: 620 LKGEADRLDSAFHLSYNMI-----LNLLRVEGISPEFMLERCFFQF-QNSLEVPK 668
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 322 RAADKIAVFLNDTFYCIIICKFSAVCF*IYNYFC 221
R A+ F ++ Y III + VC + NY C
Sbjct: 299 RCAEDFQEFTSNKTYSIIITGYETVCTYLRNYGC 332
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 25.8 bits (54), Expect = 6.8
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Frame = +2
Query: 143 DSPGYQWSSDGSGTYEIQEADGVEIGTKIVVYLKTDCREFADDDTV--KSIIK--KYSNF 310
D+ + S+GS E+ + +G+E+ + K R+ A ++TV ++I + KY +
Sbjct: 56 DTADQENESEGSDEVELSDLEGIELEEDADLIRK---RKLAINNTVALENIYERIKYPDD 112
Query: 311 VSSPIFLNNDQVNSIKPLWLFEPKEITQEQHIEFYK 418
+S F+ N V + +P+ + E E + + FYK
Sbjct: 113 IS---FVENQAVTTKEPI-IIENVEDDLARELAFYK 144
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 315 LTKLLYFLMILFTVSSSANSLQSVFKYTTIFVPISTPSAS*ISYVPDPSDDH 160
L +LY+L+ + V S +S SV ++P+S P S + D SD +
Sbjct: 243 LVMILYYLLYVLFVFFSGSSGVSVVITDENYLPVSLPVYSPVLNSFDDSDSY 294
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 281 KSIIKKYSNFVSSPIFLNNDQVNSI 355
K I+K YS+F P F ++ N I
Sbjct: 46 KGILKSYSSFSVDPAFTGDEDFNDI 70
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 401 HIEFYKFISNSYDKP 445
H+EFYK +S +KP
Sbjct: 494 HVEFYKLLSRDIEKP 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,244,592
Number of Sequences: 5004
Number of extensions: 71156
Number of successful extensions: 230
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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