Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3904
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.58 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 153  PGESPLLLLVNTSILSATINAE*NPTPNCPI 61
            P  SP + L  T+  S T+    +PT N PI
Sbjct: 1366 PPHSPQITLTATTTNSLTMKVRPHPTDNAPI 1396


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 121 YFYFVSHHKCRIESNTKLP 65
           Y Y +SH K R+E   +LP
Sbjct: 326 YVYAISHPKYRLELQKRLP 344


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -2

Query: 672 DLAECLLESTTPFNQIATI*GSIFSALLLIN---IFLEYNATPTSESRDSSKRPGFPSGT 502
           D+A+C+  S   F+++  +  S  + + LIN    F  Y        + +    G    T
Sbjct: 30  DIADCVDRSNMTFHELKKLRDSSEARIKLINEEENFRNYGCFLACIWQQTGVMNGSELST 89

Query: 501 YNIDLILNG 475
           YNI  I+ G
Sbjct: 90  YNIAGIIEG 98


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 539 VTVQRDQASLLAHTI*ILYSMAH 471
           V  QR  A+ LAH++ ++Y   H
Sbjct: 23  VNHQRKSANNLAHSMKVIYEWKH 45


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 159 NGHQMDLAHMK 191
           NG Q+DL HMK
Sbjct: 182 NGAQVDLKHMK 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,579
Number of Sequences: 438
Number of extensions: 5020
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)