Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3902
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    64   1e-11
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    50   4e-07
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    35   0.010
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.66 
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    28   1.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    27   3.5  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    26   4.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.7  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   6.1  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   8.1  

>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 38/137 (27%), Positives = 69/137 (50%)
 Frame = +2

Query: 164 MGQGKSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPE 343
           MGQ +SQ  E+ + +    + F+ +E+    ++F      K+  N++  +   + L+ P 
Sbjct: 1   MGQSQSQIFEDLISN----SSFSNEEIERIRKRFI-----KIDANQSGSIDRNEFLSIPS 51

Query: 344 LKVNPFKDRICKVFSSSNDGDCTFEDFLDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIG 523
           +  NP   R+  V      GD  F++F++ +SVFS    K  K + AF+I+D D D  I 
Sbjct: 52  VASNPLASRLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYIS 111

Query: 524 VSDLREVIQRLCGPELK 574
             +L  V++ + G  L+
Sbjct: 112 NGELYLVLKMMVGTNLR 128


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
 Frame = +2

Query: 164 MGQGKSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMAKVLTYPE 343
           MG+ +S+ ++++LQD    T F KKE+   ++ F    P   GH   ++        +P 
Sbjct: 1   MGKSQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPS--GHLNKSEFQKIYKQFFPF 58

Query: 344 LKVNPFKDRICKVFSSSNDGDCTFEDFLDMMSVFS--EMAPKAVKAEHAFRIFDFDGDDM 517
              + F + +  VF +  +G   F++F+  +SV S  E+  K +    AF+++D D + +
Sbjct: 59  GDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELNDKLI---WAFQLYDLDNNGL 115

Query: 518 IGVSDLREVIQRL 556
           I   ++  ++  +
Sbjct: 116 ISYDEMLRIVDAI 128


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +2

Query: 362 KDRICKVFSSSNDGDCTFEDFLDMMSVFSEMAPKAVKAEHAFRIFDFDGDDMIGVSDLRE 541
           +D I +V +  N G   F +FL MM+   +      +   AF++FD DG+  I V +L  
Sbjct: 51  QDMINEVDADGN-GTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTH 109

Query: 542 VIQRL 556
           V+  L
Sbjct: 110 VLTSL 114


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = -2

Query: 531 SDTPIMSSPSKSNILNACSAFTALGAISLKTDIMSKKSSKVQSPSLLELNTLHILS---L 361
           S +   SS S S+     S+ T+  + S  + + S  +S   S S  +  T+   S   +
Sbjct: 151 SSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSASSNSTI 210

Query: 360 NGFTLSSGYVSTLAIGNLAFLLCPTFSGA 274
           +GF+ S+   S+ A GN +     ++SGA
Sbjct: 211 SGFSTSTTSASSSAAGNSSSSSYTSYSGA 239


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 485 FRIFDFDGDDMIGVSDLREVIQRL 556
           F++FD D   MIGV +LR V+  L
Sbjct: 83  FQVFDKDATGMIGVGELRYVLTSL 106


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -1

Query: 511 ITIKIKYPKCMFSFYCFRSHLTEN*HHVQEVFKGAISIITGTEHLTYPIFEWIHFKFWI 335
           +  +I +  C+F F CF S L    H  + V+  A+S +  T +     F+ +   FWI
Sbjct: 403 VNSQILFLLCIFVFLCFASSLGALIH--RSVYGSALSYVKYTSNRAGMFFKGL-LTFWI 458


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 176 KSQFTEEELQDYEDLTYFTKKEVLYAHQKFKALAPEKVGHNKNAKLPMA 322
           KS    E  +D+EDL   +K   LYA   F  L  E+  H  N+  P++
Sbjct: 94  KSMTANEIGKDFEDLGIVSKMIFLYAVPAFPPLTDEQF-HEWNSVWPVS 141


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 714  DSGMHGRNQNSYL*YVQTQQRRELHHHQDLLLPKHSAPVVVFLS 583
            D   HG +Q  ++ +V+     E+ HH+ LLL K +      LS
Sbjct: 1018 DMRYHGNSQMFWI-FVEDSNGLEILHHEQLLLNKRNVSTSHLLS 1060


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 173 GKSQFTEEELQDYEDLTYFTKKEVLYA 253
           GK+ F    L    DL Y TK E LYA
Sbjct: 29  GKNDFEISLLGKVNDLVYDTKNEYLYA 55


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 597 VVFLSPDSFNSGPHRRCITSRKSDTPIMSSPSKSNILNACSAFTA 463
           + FLS   F+   H        S+ P+       N+L AC  F A
Sbjct: 300 IKFLSHPKFSRAQHFISCIELASNNPVFQRNKGRNVLPACRDFAA 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,760
Number of Sequences: 5004
Number of extensions: 59123
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)