Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3902
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.8  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 123 TYYNVCINFN*FVSYS 76
           T+Y+ C+ FN F +Y+
Sbjct: 184 TWYSQCVTFNAFPTYT 199


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 648 ELHHHQDLLLPKHSAPVVVFLSPDSFNSGPHR 553
           + +H +DL   K     V+ L   SF S P+R
Sbjct: 345 DFYHPEDLPFIKDIYETVIKLEGASFRSKPYR 376


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 648 ELHHHQDLLLPKHSAPVVVFLSPDSFNSGPHR 553
           + +H +DL   K     V+ L   SF S P+R
Sbjct: 51  DFYHPEDLPFIKDIYETVIKLEGASFRSKPYR 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 421 VFKGAISIITGTEHLTYPIFEWIHFKFWIC 332
           VF   I      ++LTY    W H   W+C
Sbjct: 506 VFTFNIIKFVPVKYLTYEYPWWSHVLGWLC 535


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 421 VFKGAISIITGTEHLTYPIFEWIHFKFWIC 332
           VF   I      ++LTY    W H   W+C
Sbjct: 559 VFTFNIIKFVPVKYLTYEYPWWSHVLGWLC 588


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 310 ITYGQSAHISRT 345
           +TYGQ+ HIS T
Sbjct: 64  LTYGQTNHISLT 75


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 310 ITYGQSAHISRT 345
           +TYGQ+ HIS T
Sbjct: 102 LTYGQTNHISLT 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,478
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)