Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3901
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   3.7  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    25   4.9  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.5  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   6.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   8.6  

>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 213 YHHPAYFRREAVMRFGS 263
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 269 WGNRCNYTETLELISR 316
           +GNRC+ T+TL  +SR
Sbjct: 271 YGNRCSSTDTLSSLSR 286


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 139 KNQTRKIIICVITGGRT 189
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 102 IDFHGEGITSCSKKSNPQNYNLRNHW 179
           I+F+GEG+ S S +S     N+   W
Sbjct: 255 IEFYGEGLNSLSIESRLTIANMTTEW 280


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 394 GRAHSPPGVKWLLEPIDIYN 335
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,867
Number of Sequences: 5004
Number of extensions: 36234
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)