Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3901
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444...    27   4.8  
10_06_0019 - 9688395-9688867,9688905-9689070                           27   6.3  
09_04_0596 + 18857082-18857484,18857572-18857728,18857801-18858221     27   8.3  

>03_02_0801 +
           11343227-11343885,11344018-11344087,11344362-11344433,
           11344511-11344980,11345626-11346598
          Length = 747

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 66  FLMKYVLN*M-FTIDFHGEGITSCSKKSNPQNYNLRNHWW 182
           +++ Y+L+ + F++   G+ +T C +  N +  N  + WW
Sbjct: 223 YVISYILDALYFSLALLGQNMTGCGRGPNNEVTNADDAWW 262


>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 157 FCGFDFLLHDVIPSPWKS 104
           +C F F+ HDV+ S W S
Sbjct: 122 YCCFTFIRHDVLASQWSS 139


>09_04_0596 + 18857082-18857484,18857572-18857728,18857801-18858221
          Length = 326

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 195 GVHTGRYHHPAYFRREAVMRF 257
           G+H    HHP Y  + A M F
Sbjct: 197 GIHEDLLHHPEYLEQNATMAF 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,469,250
Number of Sequences: 37544
Number of extensions: 240074
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)