Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3897
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 175 1e-45
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 79 3e-16
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 75 3e-15
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 27 0.86
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 26 1.5
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 1.5
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 2.0
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 24 6.1
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 24 8.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 175 bits (427), Expect = 1e-45
Identities = 78/118 (66%), Positives = 96/118 (81%)
Frame = +1
Query: 1 LHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMS 180
LHFFM GFAPL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++S
Sbjct: 263 LHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVS 322
Query: 181 MKEVDEQMLNIQNKNFSYFVEWIPNNVKTGVCDISPRGLKKAGTFIGNFTGIQELVKR 354
MKEVDEQ+ ++Q KN +YFVEWIP+NV VC + P+ LK + TFIGN T IQE+ +R
Sbjct: 323 MKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRR 380
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 78.6 bits (185), Expect = 3e-16
Identities = 33/100 (33%), Positives = 55/100 (55%)
Frame = +1
Query: 1 LHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMS 180
+HF + +AP+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG +
Sbjct: 265 IHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVI 324
Query: 181 MKEVDEQMLNIQNKNFSYFVEWIPNNVKTGVCDISPRGLK 300
++V + I+ K FV+W P K G+CD P+ ++
Sbjct: 325 PRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIE 364
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 74.9 bits (176), Expect = 3e-15
Identities = 31/103 (30%), Positives = 57/103 (55%)
Frame = +1
Query: 1 LHFFMPGFAPLTSRGSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMS 180
+HF + ++P+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG +
Sbjct: 269 IHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVI 328
Query: 181 MKEVDEQMLNIQNKNFSYFVEWIPNNVKTGVCDISPRGLKKAG 309
++V + +I+++ FV+W P K G+C P+ + +G
Sbjct: 329 PRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSG 371
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 27.1 bits (57), Expect = 0.86
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 275 ATFPLVGSRRPAPLLETSPAFKNLSSA 355
AT P +GS RP P+ E SP L A
Sbjct: 430 ATLPSLGSIRPFPISEHSPNINPLDEA 456
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 1.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 261 ENRRVRHFPSWAQEGRHLYWKLHRH 335
+N H + + RH YWKLH H
Sbjct: 59 DNLNFIHKQKFEHQFRHGYWKLHPH 83
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 1.5
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 220 KNFSYFVEWIPN---NVKTGVCDISPRGLKKAGTFIGNFTGI-QEL 345
+N SYFV + N NVK +C P G K A F +F I QEL
Sbjct: 309 ENTSYFVLNLSNTTLNVKNELCFPIPSGKKGAPVFRKHFPSILQEL 354
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 2.0
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 139 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNF--SYFVEWIPNNVK 264
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 24.2 bits (50), Expect = 6.1
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 139 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNFSYFVEWIPN 255
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 23.8 bits (49), Expect = 8.0
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +1
Query: 43 GSRQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEV 192
GS+Q R EL D C +G+YL + G MKEV
Sbjct: 186 GSKQQRETICAELAGSYVDL------CKSPYGKYLAIKIFKYGTPKMKEV 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,064
Number of Sequences: 5004
Number of extensions: 27176
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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