Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3893
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    30   0.29 
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   2.7  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.2  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 138 YLVRVTVNSIFKNQRSPHRGTRGSSENRKKKELNLRERNIKKVS 7
           +L R   +S F+++ S H    G SEN   +E      +IKK+S
Sbjct: 64  HLDRFRRDSTFESETSDHEDFSGGSENELDEETTKNANSIKKIS 107


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 602 TRKQIRNLLQILRPNRAVTSFRYNRH-KITFFYKANNNI*SYNFDEWCRITS 450
           TR+Q+R   + L   R   +   N H +ITF YK +N   S +  ++C+  S
Sbjct: 437 TREQLRRRRETLNRKRITIAKLQNNHSQITFPYKRHNIHKSVDSIQFCKPAS 488


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -2

Query: 129 RVTVNSIFKNQRSPHRGTRGSSENRKKKEL-NLRERNIKKVSN 4
           +V +N++ +N +S +RG      ++K+K+L ++++ N   VS+
Sbjct: 46  KVFLNNMVRNVQSHNRGINNRRRDQKRKQLISIKQDNDLNVSS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,491
Number of Sequences: 5004
Number of extensions: 55083
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)