Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3893
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    29   4.4  
Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 386 KWQTRKRFKVLCPCHQCKIA*LTAVSREHSNTLPLCIFDFRN*TCTYWYLIYFDE 222
           +WQT    +  C   QC+   +      + N    C F      CT++YL Y+DE
Sbjct: 665 QWQTGPLNETACD--QCEFKVIPVEELPNLNETTPCQFVDPADDCTFYYLYYYDE 717


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -3

Query: 386 KWQTRKRFKVLCPCHQCKIA*LTAVSREHSNTLPLCIFDFRN*TCTYWYLIYFDE 222
           +WQT    +  C   QC+   +      + N    C F      CT++YL Y+DE
Sbjct: 665 QWQTGPLNETACD--QCEFKVIPVEELPNLNETTPCQFVDPADDCTFYYLYYYDE 717


>Z81030-3|CAB02707.1|  138|Caenorhabditis elegans Hypothetical
           protein C01G10.5 protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 563 PNRAVTSFRYNRHKITFFYKANNNI*SYNFD 471
           PN     + YN    T++Y  NNN   Y +D
Sbjct: 27  PNNNNNGYNYNNGYTTYYYYPNNNNNGYYYD 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,212,485
Number of Sequences: 27780
Number of extensions: 308356
Number of successful extensions: 705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)